id chr start end assigned gene name distance (bp) Dl_Tl10b_DmWG_Max Dl_Tl10b_DmWG_PositionMax Twist_Tl10b_DmWG_Max Twist_Tl10b_DmWG_PositionMax Snail_Tl10b_DmWG_Max Snail_Tl10b_DmWG_PositionMax DTS high confidence TS high confidence known DV enhancer confirmed DV enhancer putative DV enhancer references sna site: 0% conservation sna site: 20% conservation sna site: 40% conservation sna site: 60% conservation sna site: 80% conservation sna site: 100% conservation twi site: 0% conservation twi site: 20% conservation twi site: 40% conservation twi site: 60% conservation twi site: 80% conservation twi site: 100% conservation dl site: 0% conservation dl site: 20% conservation dl site: 40% conservation dl site: 60% conservation dl site: 80% conservation dl site: 100% conservation 2L_89833_90645 2L 89833 90645 CG11450 net 2451 2.046218487 90222 5.733086191 90222 3.836990596 90222 1 0 0 0 0 3 1 0 0 0 0 4 3 1 0 0 0 0 0 0 0 0 0 2L_91177_92017 2L 91177 92017 CG11376 CG11376 2735 1.393907563 91847 3.822057461 91567 6.26645768 91567 0 1 0 0 0 0 0 0 0 0 0 3 2 1 1 0 0 1 0 0 0 0 0 2L_115859_116208 2L 115859 116208 CG13694 CG13694 TSS overlap 1.425420168 116108 3.575532901 116108 6.252873563 115969 0 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2L_272827_273371 2L 272827 273371 CG11604 CG11604 transcript overlap 1.323529412 273203 2.622798888 273203 5.234064786 273203 0 1 0 0 0 6 2 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2L_282329_282869 2L 282329 282869 CG11601 CG11601 transcript overlap 2.976890756 282430 3.937905468 282430 5.239289446 282430 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_377655_378257 2L 377655 378257 CG3935 al TSS overlap 1.429621849 377763 3.311399444 378011 5.571577847 378011 0 1 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_441744_442262 2L 441744 442262 CG4114 ex transcript overlap 1.177521008 441854 2.574606117 441854 5.603970742 441854 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_714813_715650 2L 714813 715650 CG17941 ds TSS overlap 1.914915966 714942 3.178869323 715222 5.293625914 715222 0 1 0 0 0 3 3 2 2 1 0 2 2 2 2 1 0 0 0 0 0 0 0 2L_849667_850820 2L 849667 850820 CG3365 drongo transcript overlap 2.018907563 850410 9.229842447 850057 19.5015674 850057 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_867463_868521 2L 867463 868521 CG4276 aru TSS overlap 1.620798319 867975 4.446709917 867975 7.785788924 867975 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2L_955175_955425 2L 955175 955425 CG4341 CG4341 transcript overlap 0.864495798 955285 9.383688601 955285 10.57784744 955285 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_1065637_1067268 2L 1065637 1067268 CG4385 S transcript overlap 2.282563025 1066838 6.030583874 1066838 8.57784744 1066838 1 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 2L_1067819_1069122 2L 1067819 1069122 CG4385 S transcript overlap 2.277310924 1068644 5.869323448 1068644 7.773249739 1068644 1 0 0 0 0 2 2 2 2 2 0 4 3 3 3 2 0 2 1 0 0 0 0 2L_1075636_1077929 2L 1075636 1077929 CG4385 S TSS overlap 5.153361345 1076585 13.06580167 1076585 15.1400209 1076585 1 0 0 0 0 5 0 0 0 0 0 3 0 0 0 0 0 7 1 0 0 0 0 2L_1119214_1120201 2L 1119214 1120201 CG4710 smi21F transcript overlap 3.590336134 1119262 4.03429101 1120039 5.966562173 1120039 1 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2L_1410429_1411976 2L 1410429 1411976 CG5481 lea transcript overlap 2.864495798 1411089 5.400370714 1411089 7.124346917 1411089 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2 1 1 0 0 0 2L_1421080_1422194 2L 1421080 1422194 CG5481 lea 631 1.412815126 1421728 3.555143652 1421728 5.597701149 1421728 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_1485874_1486434 2L 1485874 1486434 CG31928 CG31928 5880 2.017857143 1485984 3.641334569 1485984 5.415882968 1485984 1 0 0 0 0 1 1 1 1 0 0 2 2 2 2 0 0 1 0 0 0 0 0 2L_1517638_1518750 2L 1517638 1518750 CG7428 halo TSS overlap 7.673319328 1518307 16.68489342 1518307 23.31452456 1518307 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2L_1886313_1886863 2L 1886313 1886863 CG7337 CG7337 transcript overlap 1.68487395 1886694 3.178869323 1886694 5.881922675 1886694 0 1 0 0 0 2 2 2 2 1 0 2 2 2 2 1 0 3 0 0 0 0 0 2L_2162783_2165538 2L 2162783 2165538 CG3166 aop transcript overlap 3.858193277 2164809 7.511584801 2164809 10.85161964 2164809 1 0 0 0 0 3 3 3 2 0 0 5 5 5 5 0 0 1 0 0 0 0 0 2L_2171847_2173170 2L 2171847 2173170 CG3166 aop transcript overlap 1.761554622 2172238 7.355885079 2172742 10.32183908 2172742 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2L_2178240_2178982 2L 2178240 2178982 CG3166 aop TSS overlap 1.745798319 2178348 3.290083411 2178348 5.538140021 2178348 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2196649_2197467 2L 2196649 2197467 CG10874 CG10874 4277 8.650210084 2197307 3.489341983 2197030 5.177638454 2197030 1 0 0 0 0 3 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_2331397_2332233 2L 2331397 2332233 CG9967 CG9967 transcript overlap 1.485294118 2331802 3.282669138 2331802 5.169278997 2331802 0 1 0 0 0 4 2 2 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2L_2447933_2448476 2L 2447933 2448476 CG9885 dpp transcript overlap 1.239495798 2448043 3.929564411 2448043 5.098223615 2448043 0 1 0 0 1 "St. Johnston and Gelbart, 1987; Huang et al., 1993" 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2L_2456248_2457530 2L 2456248 2457530 CG9885 dpp transcript overlap 3.12289916 2456609 5.59128823 2456834 8.878787879 2456834 1 0 1 0 1 "St. Johnston and Gelbart, 1987; Huang et al., 1993" 2 1 1 1 1 1 1 1 0 0 0 0 2 1 1 1 1 1 2L_2749502_2751407 2L 2749502 2751407 CG3127 Pgk 980 15.68382353 2749612 7.549582947 2750677 10.08986416 2750677 1 0 0 0 0 5 1 1 1 1 1 4 2 2 1 1 1 0 0 0 0 0 0 2L_2999386_3001267 2L 2999386 3001267 CG3558 CG3558 6422 2.37289916 3000324 5.245597776 3000847 7.885057471 3000847 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 5 0 0 0 0 0 2L_3071598_3072957 2L 3071598 3072957 CG9660 toc transcript overlap 3.017857143 3071988 3.742354032 3071988 5.251828631 3071988 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 6 3 0 0 0 0 2L_3078380_3079457 2L 3078380 3079457 CG9660 toc transcript overlap 2.328781513 3078972 4.367933272 3078972 5.538140021 3078972 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_3082667_3084235 2L 3082667 3084235 CG9660 toc transcript overlap 3.492647059 3083310 8.160333642 3083056 9.721003135 3083056 1 0 0 0 0 6 5 3 2 1 0 2 1 1 1 0 0 2 2 1 1 1 0 2L_3094396_3095556 2L 3094396 3095556 CG9660 toc transcript overlap 4.62289916 3095091 6.101019462 3095091 7.89446186 3095091 1 0 0 0 0 6 4 3 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 2L_3532870_3533923 2L 3532870 3533923 CG8853 CG8853 1967 1.62605042 3533532 4.766450417 3533532 6.326018809 3533532 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 3 0 0 0 0 0 2L_3602601_3603124 2L 3602601 3603124 CG3851 odd 3624 1.24789916 3602991 4.12326228 3602991 6.108672936 3602991 0 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_3608131_3609727 2L 3608131 3609727 CG3851 odd 1383 2.255252101 3609067 5.907321594 3609067 7.359456635 3609067 1 0 0 0 0 2 1 1 1 0 0 4 4 3 2 2 0 1 0 0 0 0 0 2L_3614101_3615695 2L 3614101 3615695 CG2788 Dot 3597 1.459033613 3614755 3.530120482 3614755 5.861024033 3614755 0 1 0 0 0 1 1 0 0 0 0 2 2 1 1 1 0 2 1 0 0 0 0 2L_3631694_3633271 2L 3631694 3633271 CG10033 for transcript overlap 1.795168067 3632065 4.728452271 3632345 6.376175549 3632345 0 1 0 0 0 2 2 1 1 1 0 2 1 1 1 0 0 3 1 0 0 0 0 2L_3769965_3772111 2L 3769965 3772111 CG10021 bowl TSS overlap 2.649159664 3771765 5.075069509 3771765 9.297805643 3771765 1 0 0 0 0 2 2 2 2 2 2 1 0 0 0 0 0 7 2 0 0 0 0 2L_3817765_3818822 2L 3817765 3818822 CG3407 CG3407 4358 1.44012605 3818155 4.370713624 3818431 5.496342738 3818431 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_3821283_3823191 2L 3821283 3823191 CG16738 slp1 2489 1.169117647 3822750 4.080630213 3821367 5.549634274 3822750 0 1 0 0 0 1 0 0 0 0 0 4 2 0 0 0 0 1 0 0 0 0 0 2L_3833582_3834671 2L 3833582 3834671 CG2939 slp2 2171 1.399159664 3834252 3.102873031 3833972 5.655172414 3833972 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_4031335_4032204 2L 4031335 4032204 CG12676 ed TSS overlap 2.301470588 4031387 5.329935125 4031758 8.873563218 4031758 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4034385_4035154 2L 4034385 4035154 CG12676 ed transcript overlap 3.68697479 4034494 4.1918443 4034494 8.661442006 4034494 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2L_4221264_4222279 2L 4221264 4222279 CG3352 ft 3412 1.340336134 4221908 4.875810936 4221908 6.760710554 4221908 0 1 0 0 0 1 1 1 0 0 0 4 1 1 0 0 0 0 0 0 0 0 0 2L_4280814_4283291 2L 4280814 4283291 CG15427 tutl TSS overlap 1.642857143 4281964 5.835959222 4282796 9.065830721 4282796 0 1 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 3 0 0 0 0 0 2L_4286981_4287805 2L 4286981 4287805 CG15427 tutl transcript overlap 2.487394958 4287356 7.304911956 4287356 9.835945664 4287356 1 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_4363645_4364428 2L 4363645 4364428 CG3048 Traf1 7562 1.512605042 4364033 4.254865616 4364033 5.494252874 4364033 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_4366567_4367123 2L 4366567 4367123 CG3048 Traf1 4867 2.774159664 4366677 7.96107507 4366677 10.68025078 4366677 1 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4369794_4371149 2L 4369794 4371149 CG3048 Traf1 841 2.355042017 4370175 6.088044486 4370175 3.709508882 4370175 1 0 0 0 0 1 1 1 0 0 0 5 5 3 0 0 0 0 0 0 0 0 0 2L_4378054_4379933 2L 4378054 4379933 CG3048 Traf1 transcript overlap 4.31512605 4379763 5.256719184 4378719 7.771159875 4378719 1 0 0 0 0 2 2 2 1 1 0 3 3 2 2 2 0 1 0 0 0 0 0 2L_4494605_4495392 2L 4494605 4495392 CG33196 dp transcript overlap 1.381302521 4495222 4.647822057 4495222 5.536050157 4495222 0 1 0 0 0 2 1 1 1 0 0 3 3 2 0 0 0 0 0 0 0 0 0 2L_4519185_4519935 2L 4519185 4519935 CG33196 dp transcript overlap 1.260504202 4519549 4.69416126 4519549 6.871473354 4519549 0 1 0 0 0 3 1 1 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 2L_4557887_4558985 2L 4557887 4558985 CG33196 dp transcript overlap 1.278361345 4558815 4.897126969 4558255 6.249738767 4558255 0 1 0 0 0 4 1 0 0 0 0 3 2 1 1 0 0 1 1 1 1 0 0 2L_4823627_4824413 2L 4823627 4824413 CG15628 CG15628 transcript overlap 3.911764706 4824000 8.431881372 4824000 11.77324974 4824000 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 2L_5239532_5240570 2L 5239532 5240570 CG14026 tkv transcript overlap 1.852941176 5239922 5.717330862 5239922 4.648902821 5239922 0 1 0 0 0 1 1 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2L_5410156_5410951 2L 5410156 5410951 CG6604 H15 transcript overlap 1.818277311 5410528 5.100092678 5410528 7.220480669 5410528 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_5473838_5474671 2L 5473838 5474671 CG6634 mid 12197 1.360294118 5474228 3.291010195 5474228 5.16091954 5474228 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5564131_5564379 2L 5564131 5564379 CR32998 snRNA:U4:25F 1240 1.549369748 5564219 3.633920297 5564219 5.106583072 5564219 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_5658435_5658760 2L 5658435 5658760 CG31646 CG31646 TSS overlap 2.554621849 5658606 3.488415199 5658606 5.770114943 5658606 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5789144_5789950 2L 5789144 5789950 CG9171 CG9171 transcript overlap 2.93802521 5789506 4.693234476 5789506 6.684430512 5789506 1 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2L_5805186_5805495 2L 5805186 5805495 CG11034 CG11034 TSS overlap 1.891806723 5805268 5.122335496 5805268 7.593521421 5805268 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_5870267_5871594 2L 5870267 5871594 CG8965 CG8965 transcript overlap 3.621848739 5871202 16.23169601 5871202 19.77429467 5871202 1 0 0 0 0 1 1 1 1 0 0 2 2 2 2 2 1 2 1 0 0 0 0 2L_5907362_5907901 2L 5907362 5907901 CG14001 bchs transcript overlap 2.075630252 5907731 4.746061168 5907470 6.586206897 5907470 1 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2L_5996899_5997634 2L 5996899 5997634 CG9088 lid transcript overlap 1.608193277 5997190 2.557924004 5997190 5.263322884 5997190 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2L_6071366_6072155 2L 6071366 6072155 CG9159 Kr-h2 transcript overlap 1.43907563 6071476 7.843373494 6071705 12.65621735 6071705 0 1 0 0 0 3 2 2 2 2 2 3 2 2 2 2 2 1 0 0 0 0 0 2L_6078751_6079799 2L 6078751 6079799 CG9162 CG9162 298 2.675420168 6078878 6.40871177 6078878 9.426332288 6078878 1 0 0 0 0 3 2 0 0 0 0 5 1 1 0 0 0 2 1 0 0 0 0 2L_6088389_6088876 2L 6088389 6088876 CG18783 Kr-h1 transcript overlap 4.551470588 6088499 4.504170528 6088499 5.827586207 6088499 1 0 0 0 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 2L_6152814_6153332 2L 6152814 6153332 CG13990 CG13990 transcript overlap 0.671218487 6153034 5.77849861 6153034 9.503657262 6153034 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_6373022_6374641 2L 6373022 6374641 CG9506 slam transcript overlap 2.330882353 6374471 2.628359592 6374471 5.21630094 6374471 1 0 0 0 0 5 2 1 0 0 0 1 1 0 0 0 0 3 0 0 0 0 0 2L_6646108_6646877 2L 6646108 6646877 CG31635 CG31635 transcript overlap 1.387605042 6646479 4.662650602 6646479 7.868338558 6646479 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_6722672_6723327 2L 6722672 6723327 CG11324 homer transcript overlap 2.272058824 6722782 4.690454124 6722782 7.742946708 6722782 1 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2L_6734389_6735221 2L 6734389 6735221 CG11201 CG11201 transcript overlap 1.256302521 6734779 7.860055607 6734779 14.18913271 6734779 0 1 0 0 0 3 3 2 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_6788279_6788529 2L 6788279 6788529 CG9258 nrv1 1430 0.950630252 6788359 4.738646895 6788359 6.654127482 6788359 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_7009420_7011364 2L 7009420 7011364 CG13776 CG13776 2132 3.369747899 7010639 6.912882298 7010639 7.247648903 7010639 1 0 0 0 0 2 1 1 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 2L_7056034_7057966 2L 7056034 7057966 CG13778 Mnn1 TSS overlap 4.966386555 7056265 3.020389249 7056381 5.335423197 7056661 1 0 0 0 0 8 3 1 1 0 0 4 1 1 1 0 0 0 0 0 0 0 0 2L_7289871_7290653 2L 7289871 7290653 CG13785 CG13785 7338 4.551470588 7290217 3.860055607 7289977 5.871473354 7289977 1 0 0 0 0 3 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_7299287_7300660 2L 7299287 7300660 CG4889 wg 6501 2.457983193 7300211 4.888785913 7300211 7.247648903 7300211 1 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 2 1 1 0 0 0 2L_7526157_7527515 2L 7526157 7527515 CG33529 Rapgap1 transcript overlap 1.759453782 7527083 3.882298424 7527083 5.20585162 7527083 0 1 0 0 0 2 2 0 0 0 0 4 2 1 0 0 0 2 0 0 0 0 0 2L_8145240_8145788 2L 8145240 8145788 CG8552 CG8552 transcript overlap 1.807773109 8145350 3.990732159 8145350 5.988505747 8145350 0 1 0 0 0 3 1 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 2L_8156687_8157237 2L 8156687 8157237 CG8552 CG8552 transcript overlap 2.357142857 8156792 3.732159407 8157067 5.112852665 8157067 1 0 0 0 0 3 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_8208906_8209746 2L 8208906 8209746 CG8409 Su(var)205 1387 3.048319328 8209296 2.810009268 8209296 5.037617555 8209016 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8266339_8267011 2L 8266339 8267011 CG8049 Btk29A transcript overlap 1.853991597 8266838 6.064874884 8266838 9.258098224 8266838 0 1 0 0 0 4 2 0 0 0 0 5 1 1 0 0 0 0 0 0 0 0 0 2L_8415689_8417207 2L 8415689 8417207 CG13388 Akap200 TSS overlap 3.316176471 8415719 6.024096386 8416588 9.234064786 8416588 1 0 0 0 0 2 1 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2L_8521747_8522356 2L 8521747 8522356 CG10593 Acer TSS overlap 1.421218487 8521906 7.407784986 8521906 10.45768025 8521906 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_8809697_8810218 2L 8809697 8810218 CG18024 SoxN 15407 1.707983193 8810056 3.574606117 8810056 5.76907001 8810056 0 1 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8832084_8832897 2L 8832084 8832897 CG18024 SoxN 6459 2.74894958 8832448 4.892493049 8832448 6.539184953 8832448 1 0 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 3 1 1 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2L_8841307_8842609 2L 8841307 8842609 CG18024 SoxN 15682 4.200630252 8842161 9.721964782 8842161 13.74399164 8842161 1 0 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 1 0 0 0 0 0 1 0 0 0 0 0 3 2 1 1 0 0 2L_8845744_8847674 2L 8845744 8847674 CG32986 CG32986 15133 1.870798319 8846094 5.980537535 8846920 8.614420063 8846920 0 1 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 2L_8848744_8850048 2L 8848744 8850048 CG32986 CG32986 12759 7.339285714 8849405 17.5931418 8849405 22.81295716 8849405 1 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 1 1 0 0 0 0 2L_8875575_8876421 2L 8875575 8876421 CG9483 CG9483 8808 1.62605042 8875973 8.113994439 8875973 14.41065831 8875973 0 1 0 0 0 4 3 2 2 2 2 2 2 2 2 2 2 1 1 0 0 0 0 2L_9012355_9013850 2L 9012355 9013850 CG13102 CG13102 transcript overlap 1.49789916 9012728 7.359592215 9013289 9.257053292 9013289 0 1 0 0 0 6 3 3 1 0 0 5 2 2 0 0 0 0 0 0 0 0 0 2L_9144762_9147130 2L 9144762 9147130 CG32982 CG32982 transcript overlap 2.721638655 9145897 6.533827618 9146437 8.92476489 9146437 1 0 0 0 0 3 3 3 3 3 3 7 7 6 4 4 3 4 1 0 0 0 0 2L_9431474_9431961 2L 9431474 9431961 CG3766 scat transcript overlap 1.557773109 9431654 4.21686747 9431654 6.808777429 9431654 0 1 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_9454180_9455027 2L 9454180 9455027 CG3779 numb transcript overlap 2.282563025 9454557 10.16496756 9454557 10.87147335 9454557 1 0 0 0 0 1 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 2L_9570115_9570696 2L 9570115 9570696 CG3838 CG3838 transcript overlap 1.179621849 9570505 4.28544949 9570365 7.409613375 9570505 0 1 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 2L_9601885_9602453 2L 9601885 9602453 CG4382 CG4382 993 1.546218487 9602285 4.020389249 9602285 5.739811912 9602285 0 1 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_9609665_9610003 2L 9609665 9610003 CG3858 gcm2 transcript overlap 1.962184874 9609845 3.481000927 9609845 5.011494253 9609845 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_9938206_9939040 2L 9938206 9939040 CG4619 CG31713 CG4619 CG31713 TSS overlap 6.119747899 9938799 3.844300278 9938659 5.728317659 9938659 1 0 0 0 0 4 3 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 2L_9984011_9984860 2L 9984011 9984860 CG4722 CG13130 bib CG13130 TSS overlap 11.36659664 9984121 3.258572753 9984690 5.390804598 9984690 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_9987858_9990262 2L 9987858 9990262 CG4722 bib transcript overlap 5.049369748 9988508 13.21964782 9988508 16.61755486 9988508 1 0 0 0 0 4 4 4 4 4 3 8 6 5 4 4 3 2 0 0 0 0 0 2L_10264484_10264727 2L 10264484 10264727 CG18619 CG18619 transcript overlap 1.853991597 10264594 3.003707136 10264594 5.108672936 10264594 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_10339323_10339946 2L 10339323 10339946 CG5029 SamDC TSS overlap 3.06407563 10339370 3.023169601 10339496 5.034482759 10339496 1 0 0 0 0 3 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 2L_10548614_10549385 2L 10548614 10549385 CG31721 Trim9 transcript overlap 2.140461216 10548937 4.230936819 10548937 7.276388889 10548937 1 0 0 0 1 "Biemar et al., 2006, based on in situs" 2 2 2 1 1 0 1 1 1 1 1 0 1 0 0 0 0 0 2L_11447614_11448150 2L 11447614 11448150 CG6464 salm 2011 2.278825996 11447702 4.901960784 11447702 8.215277778 11447702 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_11485834_11486368 2L 11485834 11486368 CG4922 sala TSS overlap 2.115303983 11486198 4.37037037 11485944 6.776388889 11485944 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_11970677_11971482 2L 11970677 11971482 CR31863 bft TSS overlap 1.544025157 11971290 8.561002179 11971290 15.375 11971010 0 1 0 0 0 3 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_12002877_12003792 2L 12002877 12003792 CG6746 CG6746 601 2.593291405 12003120 10.31154684 12003120 16.05277778 12003120 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_12007066_12007921 2L 12007066 12007921 CG5279 Rh5 455 2.174004193 12007731 5.074074074 12007451 11.25555556 12007451 1 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_12010444_12012582 2L 12010444 12012582 CG5279 Rh5 2068 2.072327044 12011395 5.015250545 12010554 6.991666667 12010831 1 0 0 0 0 5 3 3 2 2 1 5 2 0 0 0 0 0 0 0 0 0 0 2L_12079753_12080608 2L 12079753 12080608 CG14947 CG14947 2930 2.025157233 12080106 5.956427015 12080106 12.91666667 12080106 1 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_12457269_12458378 2L 12457269 12458378 CG5461 bun transcript overlap 1.50524109 12457411 4.027233115 12457929 6.543055556 12457929 0 1 0 0 1 "Biemar et al., 2006, based on in situs" 3 2 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_12665974_12666528 2L 12665974 12666528 CG12287 pdm2 transcript overlap 2.248427673 12666358 3.648148148 12666358 5.805555556 12666078 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 2L_12679319_12679873 2L 12679319 12679873 CG12287 pdm2 transcript overlap 1.596436059 12679439 4.204793028 12679439 6.615277778 12679439 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_12769126_12769394 2L 12769126 12769394 CG15483 CG15483 7286 2.174004193 12769236 3.9291939 12769236 6.458333333 12769236 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_12846913_12847710 2L 12846913 12847710 CG12283 kek1 24126 1.486373166 12847303 4.769063181 12847303 5.618055556 12847303 0 1 0 0 0 4 3 3 3 2 2 5 4 4 4 4 4 1 0 0 0 0 0 2L_13224850_13225952 2L 13224850 13225952 CG15480 CG15480 TSS overlap 4.137316562 13225782 10.80065359 13225502 15.61944444 13225502 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 2L_13226921_13228034 2L 13226921 13228034 CG16813 CG16813 TSS overlap 3.462264151 13227586 8.187363834 13227306 12.95277778 13227306 1 0 0 0 0 3 2 2 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_13229160_13229972 2L 13229160 13229972 CG16815 CG16815 TSS overlap 1.458071279 13229277 3.586056645 13229803 6.281944444 13229803 0 1 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 2L_13597092_13597892 2L 13597092 13597892 CG7147 kuz transcript overlap 2.667714885 13597473 5.665577342 13597473 6.7875 13597473 1 0 0 0 0 1 0 0 0 0 0 3 2 2 2 0 0 2 0 0 0 0 0 2L_13665816_13666342 2L 13665816 13666342 CG18507 CG18507 transcript overlap 1.226415094 13666184 2.85620915 13666184 5.016666667 13666184 0 1 0 0 0 2 2 2 2 2 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_13850664_13851766 2L 13850664 13851766 CG31811 cenG1A transcript overlap 1.796645702 13851317 4.5708061 13851317 6.765277778 13851317 0 1 0 0 0 1 0 0 0 0 0 3 2 2 2 1 0 1 0 0 0 0 0 2L_13867435_13868230 2L 13867435 13868230 CG31811 cenG1A transcript overlap 2.831236897 13867824 5.696078431 13867824 9.476388889 13867824 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_14023983_14024718 2L 14023983 14024718 CG31840 CG31840 TSS overlap 2.0639413 14024243 3.885620915 14024574 5.611111111 14024574 1 0 0 0 0 2 2 2 1 1 1 5 4 3 1 1 1 0 0 0 0 0 0 2L_14025760_14028042 2L 14025760 14028042 CG4500 CG4500 TSS overlap 3.980083857 14027320 5.38453159 14025867 6.738888889 14025867 1 0 0 0 0 0 0 0 0 0 0 8 3 2 1 0 0 2 1 1 1 0 0 2L_14261570_14263064 2L 14261570 14263064 CG15288 wb 458 7.031446541 14262253 28.4956427 14262253 31.8125 14262253 1 0 0 0 0 3 2 2 1 1 0 3 3 2 0 0 0 1 1 1 1 1 0 2L_14264719_14265615 2L 14264719 14265615 CG15288 wb transcript overlap 1.704402516 14265217 8.691721133 14265217 11.26944444 14265217 0 1 0 0 0 1 1 0 0 0 0 3 3 3 3 2 0 1 1 1 0 0 0 2L_14435724_14436263 2L 14435724 14436263 CG3474 CG3474 10593 2.380503145 14436093 4.60130719 14436093 6.573611111 14436093 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_14443525_14444364 2L 14443525 14444364 CG15283 CG15283 6452 2.085953878 14444194 5.32788671 14444194 6.704166667 14444194 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_14445434_14446499 2L 14445434 14446499 CG15283 CG15283 4317 1.701257862 14445795 10.583878 14445795 16.72361111 14445795 0 1 0 0 0 2 2 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_14484754_14486652 2L 14484754 14486652 CG4491 noc 4210 2.012578616 14486482 4.387799564 14486254 6.741666667 14486254 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_14489015_14489519 2L 14489015 14489519 CG4491 noc 1343 2.29769392 14489374 3.264705882 14489374 6.029166667 14489374 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_14490561_14491118 2L 14490561 14491118 CG4491 noc TSS overlap 2.384696017 14490671 3.446623094 14490671 5.051388889 14490671 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_14736034_14736233 2L 14736034 14736233 CG31835 CG31835 transcript overlap 1.460167715 14736074 2.387799564 14736074 5.008333333 14736074 0 1 0 0 0 2 2 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2L_15320030_15320870 2L 15320030 15320870 CG15259 nht 4195 1.636268344 15320700 5.966230937 15320700 8.281944444 15320700 0 1 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_15329055_15329954 2L 15329055 15329954 CG3758 esg TSS overlap 2.139412998 15329854 4.502178649 15329434 6.247222222 15329714 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_15471864_15476418 2L 15471864 15476418 CG3956 sna TSS overlap 8.214884696 15475689 12.10893246 15475689 19.23611111 15475689 1 0 1 0 1 "Ip et al., 1992" 2 2 2 1 1 0 5 3 3 1 0 0 10 2 1 1 0 0 2L_15481464_15483061 2L 15481464 15483061 CG15257 Tim17b2 transcript overlap 6.761006289 15482028 20.67647059 15481754 31.43055556 15481754 1 0 0 0 0 4 4 1 0 0 0 8 7 5 4 0 0 2 1 0 0 0 0 2L_15486876_15488634 2L 15486876 15488634 CG15257 Tim17b2 transcript overlap 4.609014675 15488464 6.849673203 15488464 9.151388889 15488464 1 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 6 1 1 1 0 0 2L_15561972_15562512 2L 15561972 15562512 CG4192 kek3 12370 1.230607966 15562080 5.910675381 15562080 9.354166667 15562080 0 1 0 0 0 5 3 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_15743545_15744042 2L 15743545 15744042 CG3938 CycE transcript overlap 1.899371069 15743934 4.4291939 15743654 6.729166667 15743654 0 1 0 0 0 3 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_16230617_16231434 2L 16230617 16231434 CG12455 CG12455 transcript overlap 1.002096436 16230984 6.864923747 16230984 9.731944444 16230984 0 1 0 0 0 5 4 2 2 2 1 3 3 3 3 2 1 1 0 0 0 0 0 2L_16275721_16276346 2L 16275721 16276346 CG7664 crp transcript overlap 2.056603774 16276066 3.693899782 16276066 5.219444444 16276066 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_16277127_16278640 2L 16277127 16278640 CG7664 crp transcript overlap 2.764150943 16277347 5.54248366 16277347 6.447222222 16277347 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_16319162_16319990 2L 16319162 16319990 CG5848 cact transcript overlap 4.606918239 16319549 11.85294118 16319549 16.82361111 16319549 1 0 0 0 0 2 2 1 1 1 0 2 2 2 2 2 2 1 1 1 1 1 1 2L_16325727_16326383 2L 16325727 16326383 CG4440 CG4440 TSS overlap 2.117400419 16325897 6.628540305 16326177 7.752777778 16326177 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_16639236_16639985 2L 16639236 16639985 CG31738 CG31738 transcript overlap 1.591194969 16639553 2.862745098 16639553 6 16639553 0 1 0 0 0 3 3 2 0 0 0 3 2 2 0 0 0 1 0 0 0 0 0 2L_16741976_16742895 2L 16741976 16742895 CG17912 CG17912 2643 2.799790356 16742429 10.90631808 16742429 16.96111111 16742429 1 0 0 0 0 3 2 2 1 1 1 0 0 0 0 0 0 4 1 1 0 0 0 2L_17217370_17218981 2L 17217370 17218981 CG15138 beat-IIIc transcript overlap 1.605870021 17218542 4.125272331 17218286 6.976388889 17218286 0 1 0 0 0 2 2 1 1 0 0 3 2 1 1 1 0 1 1 0 0 0 0 2L_17259161_17259682 2L 17259161 17259682 CG15138 beat-IIIc 2500 1.011530398 17259270 5.910675381 17259270 8.963888889 17259543 0 1 0 0 0 2 2 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_17378176_17378962 2L 17378176 17378962 CG6860 CG6860 transcript overlap 6.225366876 17378542 12.52614379 17378542 19.53472222 17378542 1 0 0 0 0 2 1 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 2L_17606556_17607335 2L 17606556 17607335 CG15147 CG15147 14939 1.332285115 17607195 3.716775599 17607195 6.606944444 17606942 0 1 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2L_17744588_17745109 2L 17744588 17745109 CG7100 CadN 9138 2.551362683 17744939 6.737472767 17744696 4.752777778 17744939 1 0 0 0 1 "Biemar et al., 2006" 2 1 1 1 0 0 2 2 2 2 0 0 0 0 0 0 0 0 2L_17746765_17747317 2L 17746765 17747317 CG7100 CadN 11315 2.107966457 17747147 3.496732026 17747147 5.034722222 17747147 1 0 0 0 1 "Biemar et al., 2006" 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 2L_18087592_18088419 2L 18087592 18088419 CG15153 CG15153 TSS overlap 1.402515723 18088096 3.20043573 18088096 5.538888889 18088096 0 1 0 0 0 7 3 3 0 0 0 3 2 2 1 1 0 1 0 0 0 0 0 2L_18329537_18330079 2L 18329537 18330079 CG5803 Fas3 transcript overlap 1.895178197 18329908 4.874727669 18329908 7.861111111 18329908 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_18350299_18350808 2L 18350299 18350808 CG5803 Fas3 transcript overlap 1.246331237 18350638 3.44335512 18350638 5.630555556 18350638 0 1 0 0 0 3 3 0 0 0 0 2 2 0 0 0 0 2 2 2 0 0 0 2L_18357149_18357692 2L 18357149 18357692 CG5803 Fas3 transcript overlap 1.977987421 18357256 5.41503268 18357256 5.075 18357256 0 1 0 0 0 1 1 1 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 2L_18399301_18399591 2L 18399301 18399591 CG31749 CG31749 17058 0.893081761 18399410 3.169934641 18399410 5.805555556 18399410 0 1 0 0 0 2 2 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 2L_18482553_18483320 2L 18482553 18483320 CG10176 CG10176 transcript overlap 2.678197065 18482918 4.734204793 18482918 6.975 18482918 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2L_18611752_18613400 2L 18611752 18613400 CG15161 CG15162 CG15161 MESR3 TSS overlap 2.047169811 18611998 9.519607843 18611862 15.4125 18611862 1 0 0 0 0 3 1 0 0 0 0 3 1 0 0 0 0 1 1 0 0 0 0 2L_18870798_18872110 2L 18870798 18872110 CG10619 tup transcript overlap 1.678197065 18871188 5.958605664 18871188 8.405555556 18871414 0 1 0 1 1 "Frank and Rushlow, 1996" 4 3 1 1 1 0 2 0 0 0 0 0 2 1 1 0 0 0 2L_18877093_18877657 2L 18877093 18877657 CG10619 tup TSS overlap 3.393081761 18877133 7.964052288 18877487 14.52222222 18877487 1 0 0 0 1 "Frank and Rushlow, 1996" 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_18891098_18891898 2L 18891098 18891898 CG10619 tup 13913 1.363731656 18891208 4.562091503 18891488 8.205555556 18891488 0 1 0 0 1 "Frank and Rushlow, 1996" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_19150491_19151491 2L 19150491 19151491 CG10719 brat transcript overlap 3.900419287 19151150 6.992374728 19150870 12.42638889 19150870 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_19151865_19152911 2L 19151865 19152911 CG10719 brat transcript overlap 1.987421384 19152254 4.145969499 19152254 6.225 19152254 0 1 0 0 0 3 1 1 0 0 0 3 1 1 0 0 0 2 0 0 0 0 0 2L_19156906_19157446 2L 19156906 19157446 CG10719 brat transcript overlap 1.84591195 19157296 3.468409586 19157296 6.625 19157296 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_19215521_19216607 2L 19215521 19216607 CG17348 drl 29246 1.408805031 19215884 5.061002179 19216159 8.390277778 19216159 0 1 0 0 0 5 3 2 2 2 1 1 1 1 1 1 0 2 0 0 0 0 0 2L_19322645_19323205 2L 19322645 19323205 CG10750 CG10750 26410 2.756813417 19322755 5.74291939 19322755 8.254166667 19322755 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_19333384_19334717 2L 19333384 19334717 CG17559 dnt 24436 3.153039832 19334299 6.08496732 19334050 9.191666667 19334050 1 0 0 0 0 5 3 2 1 1 0 1 1 1 0 0 0 2 0 0 0 0 0 2L_19503996_19504725 2L 19503996 19504725 CG10188 CG10188 TSS overlap 2.939203354 19504623 3.71459695 19504106 6.1625 19504343 1 0 0 0 0 2 0 0 0 0 0 2 2 1 1 0 0 3 1 1 0 0 0 2L_19815623_19816192 2L 19815623 19816192 CR32880 snRNA:U5:38ABb 3280 1.363731656 19816022 4.64379085 19815742 7.7875 19816022 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 2L_19947602_19948086 2L 19947602 19948086 CG10662 CG10662 2238 1.542976939 19947923 5.887799564 19947700 4.606944444 19947700 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 2L_20124023_20124583 2L 20124023 20124583 CG10651 CG10651 6247 2.008385744 20124413 5.049019608 20124413 6.998611111 20124413 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_20468594_20469458 2L 20468594 20469458 CR32958 mir-1 5631 2.024109015 20468984 12.58932462 20468984 11.67222222 20468984 1 0 1 0 1 "Biemar et al., 2005" 3 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 2L_20473425_20476067 2L 20473425 20476067 CR32958 mir-1 TSS overlap 7.963312369 20475901 18.85185185 20473789 14.16111111 20473789 1 0 0 0 1 "Biemar et al., 2005" 3 0 0 0 0 0 7 0 0 0 0 0 2 0 0 0 0 0 2L_20765933_20766465 2L 20765933 20766465 CG1759 cad transcript overlap 1.56918239 20766323 4.227668845 20766043 6.745833333 20766043 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21089926_21090976 2L 21089926 21090976 CG12050 CG9257 CG12050 CG9257 TSS overlap 4.417190776 21090526 8.565359477 21090526 14.22361111 21090526 1 0 0 0 0 2 1 1 1 0 0 2 2 1 1 0 0 1 0 0 0 0 0 2L_21150347_21150681 2L 21150347 21150681 CG9247 CG9247 TSS overlap 2.313417191 21150582 4.087145969 21150582 5.541666667 21150582 1 0 0 0 0 3 2 1 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2L_21225246_21225992 2L 21225246 21225992 CG8676 Hr39 transcript overlap 2.019916143 21225554 6.859477124 21225554 11.61944444 21225554 1 0 0 0 0 4 3 2 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2L_21606293_21606913 2L 21606293 21606913 CG2201 CG2201 transcript overlap 1.643584521 21606465 3.468 21606330 5.148825065 21606330 0 1 0 0 0 0 0 0 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 2L_21834858_21835698 2L 21834858 21835698 CG1374 tsh 18670 1.599796334 21835248 4.315 21835248 5.270234987 21835248 0 1 0 0 0 3 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2L_21848032_21848773 2L 21848032 21848773 CG1374 tsh 31844 1.433808554 21848343 4.099 21848343 7.176240209 21848343 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_22006191_22006880 2L 22006191 22006880 CR33987 CR33987 29 1.547861507 22006780 3.923 22006526 6.263707572 22006526 0 1 0 0 0 2 1 1 1 1 1 3 1 1 1 1 1 0 0 0 0 0 0 2R_1365604_1365879 2R 1365604 1365879 CG14469 dpr12 transcript overlap 0.823828921 1365709 5.226 1365709 6.838120104 1365709 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_1407942_1408729 2R 1407942 1408729 CG12551 CG12551 19592 0.956211813 1408279 9.748 1408279 15.78720627 1408279 0 1 0 0 0 6 0 0 0 0 0 6 0 0 0 0 0 1 0 0 0 0 0 2R_1444790_1446352 2R 1444790 1446352 CG14470 CG14470 12545 2.00305499 1445919 4.97 1445919 6.742819843 1445641 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2R_1625968_1626480 2R 1625968 1626480 CG1765 EcR transcript overlap 1.146639511 1626091 4.442 1626091 5.938642298 1626091 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_1629140_1630168 2R 1629140 1630168 CG1765 EcR transcript overlap 3.483706721 1629519 7.437 1629519 10.07441253 1629519 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_1632786_1633567 2R 1632786 1633567 CG1765 EcR transcript overlap 1.368635438 1633437 2.292 1633157 5.238903394 1633157 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2R_1701326_1704550 2R 1701326 1704550 CG11212 Ptr TSS overlap 2.315682281 1701685 6.843 1703054 12.35248042 1703054 1 0 0 0 0 9 4 4 2 0 0 8 3 1 0 0 0 5 0 0 0 0 0 2R_2028401_2028905 2R 2028401 2028905 CG9397 1.28 transcript overlap 1.311608961 2028735 3.02 2028507 5.591383812 2028735 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2084615_2086226 2R 2084615 2086226 CG15233 CG15233 26565 2.459266802 2085482 18.873 2085482 30.09660574 2085482 1 0 0 0 0 1 0 0 0 0 0 3 2 2 2 2 2 2 2 0 0 0 0 2R_2097408_2098239 2R 2097408 2098239 CG15233 CG15233 14552 1.356415479 2097797 5.95 2097797 11.56266319 2097797 0 1 0 0 0 2 2 1 1 0 0 3 3 3 2 1 0 1 1 1 0 0 0 2R_2325703_2326223 2R 2325703 2326223 CG3287 CG3287 transcript overlap 1.846232179 2325788 2.735 2325788 5.040469974 2325788 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2617623_2618609 2R 2617623 2618609 CG12833 esn transcript overlap 1.696537678 2618286 8.824 2618286 14.09660574 2618286 0 1 0 0 0 3 3 3 1 1 1 2 1 1 1 1 0 1 0 0 0 0 0 2R_2698825_2699349 2R 2698825 2699349 CG11084 pk transcript overlap 0.887983707 2698935 3.18 2699057 6.404699739 2699057 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_2891911_2894049 2R 2891911 2894049 CG17800 Dscam TSS overlap 7.255600815 2892554 17.784 2892554 27.79634465 2892554 1 0 0 0 1 "Stathopoulos et al., 2002 " 3 1 1 1 1 0 3 2 1 1 1 0 3 0 0 0 0 0 2R_2918770_2919507 2R 2918770 2919507 CG11166 CG11166 transcript overlap 1.595723014 2919405 2.467 2918850 5.618798956 2919130 0 1 0 0 0 5 3 2 2 2 0 1 1 1 1 1 0 0 0 0 0 0 0 2R_2930064_2931183 2R 2930064 2931183 CG11121 so TSS overlap 1.809572301 2930395 8.854 2930483 18.11096606 2930483 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_3002159_3002986 2R 3002159 3002986 CG1624 dpld 483 1.899185336 3002537 9.737 3002537 14.02088773 3002537 0 1 0 0 0 3 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3050209_3050990 2R 3050209 3050990 CG1598 CG1598 transcript overlap 1.250509165 3050596 3.687 3050596 6.267624021 3050596 0 1 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3104436_3104995 2R 3104436 3104995 CG2092 scra transcript overlap 1.427698574 3104545 3.254 3104825 5.7845953 3104825 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_3135262_3135746 2R 3135262 3135746 CG30492 CG30492 transcript overlap 1.094704684 3135577 4.187 3135577 5.134464752 3135577 0 1 0 0 0 3 3 2 2 0 0 2 2 2 2 0 0 0 0 0 0 0 0 2R_3413672_3414229 2R 3413672 3414229 CG30377 CG30377 transcript overlap 1.547861507 3414080 3.053 3413744 5.024804178 3413744 0 1 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_3459491_3460051 2R 3459491 3460051 CG14764 CG14764 transcript overlap 2.8401222 3459881 4.361 3459881 6.839425587 3459881 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3757667_3758424 2R 3757667 3758424 CG14760 CG14760 7645 2.015274949 3758230 6.021 3758230 9.770234987 3758230 1 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 2 0 0 0 0 0 2R_3872813_3873948 2R 3872813 3873948 CG30365 CG30365 TSS overlap 2.49389002 3873203 7.971 3873203 8.891644909 3873429 1 0 0 0 0 2 2 1 1 0 0 2 2 2 1 0 0 3 1 1 1 0 0 2R_4142750_4143544 2R 4142750 4143544 CG8635 CG8635 transcript overlap 1.218940937 4143140 3.543 4143140 5.339425587 4143140 0 1 0 0 0 2 2 2 1 0 0 1 1 1 1 0 0 3 1 1 1 1 1 2R_4154841_4155926 2R 4154841 4155926 CG2411 ptc 5522 1.723014257 4155482 4.681 4155482 7.171018277 4155482 0 1 0 0 0 5 1 1 1 0 0 4 1 1 1 1 1 2 0 0 0 0 0 2R_4169474_4170261 2R 4169474 4170261 CG2411 ptc transcript overlap 1.781059063 4169817 4.34 4169817 7.860313316 4169817 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_4313574_4314370 2R 4313574 4314370 CG33141 sns transcript overlap 2.896130346 4313921 12.452 4313921 17.5 4313921 1 0 0 0 0 2 1 1 0 0 0 5 1 0 0 0 0 2 0 0 0 0 0 2R_4374119_4374922 2R 4374119 4374922 CG10844 Rya-r44F transcript overlap 3.650712831 4374489 5.158 4374489 7.596605744 4374489 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2R_4650241_4650982 2R 4650241 4650982 CG8788 CG8788 TSS overlap 2.118126273 4650417 5.04 4650417 3.458224543 4650417 1 0 0 0 0 1 0 0 0 0 0 5 1 0 0 0 0 1 1 0 0 0 0 2R_4931310_4932731 2R 4931310 4932731 CG13955 CG13955 2704 3.877800407 4931700 10.423 4931700 15.51174935 4931700 1 0 0 0 0 3 0 0 0 0 0 4 1 0 0 0 0 2 0 0 0 0 0 2R_5206470_5207001 2R 5206470 5207001 CG1782 Uba1 1329 1.575356415 5206579 2.821 5206579 5.194516971 5206579 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2R_5226201_5226688 2R 5226201 5226688 CG1772 dap transcript overlap 2.051934827 5226550 4.717 5226550 6.809399478 5226550 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_5443138_5443816 2R 5443138 5443816 CG1429 Mef2 transcript overlap 1.923625255 5443646 6.147 5443646 3.763707572 5443646 0 1 0 0 1 "Taylor et al., 1995" 2 2 2 2 2 2 2 2 1 1 1 1 0 0 0 0 0 0 2R_5471782_5472603 2R 5471782 5472603 CG12130 CG12130 transcript overlap 2.214867617 5472155 6.615 5472155 5.424281984 5472155 1 0 0 0 0 1 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 2R_5485185_5486282 2R 5485185 5486282 CG12134 CG12134 2223 1.257637475 5485832 3.198 5485832 5.293733681 5485567 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_5497584_5498642 2R 5497584 5498642 CG2331 TER94 2332 1.358452138 5498472 3.486 5498200 5.762402089 5498200 0 1 0 0 0 2 2 1 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 2R_5636019_5636854 2R 5636019 5636854 CG30011 gem 305 1.49185336 5636705 2.566 5636401 5.933420366 5636705 0 1 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2R_5943722_5944567 2R 5943722 5944567 CG11763 micr transcript overlap 1.354378819 5944390 4.169 5944390 7.779373368 5944390 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_5996999_5999006 2R 5996999 5999006 CG12052 lola transcript overlap 4.031568228 5998298 3.804 5998298 6.071801567 5997079 1 0 0 0 0 2 2 2 1 1 0 6 4 4 1 0 0 2 0 0 0 0 0 2R_6093259_6096221 2R 6093259 6096221 CG2368 psq transcript overlap 2.082484725 6096051 7.855 6094973 13.4464752 6094973 1 0 0 0 0 1 1 0 0 0 0 5 2 1 1 0 0 2 0 0 0 0 0 2R_6422408_6422668 2R 6422408 6422668 CG12943 CG12943 2840 1.771894094 6422498 5.114 6422498 7.439947781 6422498 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_6694844_6695084 2R 6694844 6695084 CG7734 shn transcript overlap 1.33299389 6694947 11.952 6694947 21.1383812 6694947 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6707354_6707906 2R 6707354 6707906 CG7734 shn transcript overlap 3.216904277 6707736 3.218 6707736 5.772845953 6707461 1 0 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 1 1 1 1 1 0 2R_6713007_6716096 2R 6713007 6716096 CG7734 shn transcript overlap 1.948065173 6715060 5.002 6715060 6.818537859 6715060 0 1 0 0 0 5 3 3 2 2 1 4 3 2 1 1 1 2 1 1 1 1 0 2R_6753498_6754025 2R 6753498 6754025 CG13216 CG13216 876 1.49592668 6753608 5.348 6753888 9.610966057 6753608 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6896158_6896915 2R 6896158 6896915 CG13200 CG13200 204 2.042769857 6896268 4.335 6896268 6.011749347 6896268 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_7048168_7048725 2R 7048168 7048725 CG9015 en 4051 1.266802444 7048278 4.942 7048278 7.68537859 7048278 0 1 0 0 0 0 0 0 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 2R_7053070_7053844 2R 7053070 7053844 CG9015 en 8953 1.583503055 7053676 4.263 7053396 6.793733681 7053396 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_7062435_7062989 2R 7062435 7062989 CG9015 en 18318 1.915478615 7062545 3.929 7062545 5.308093995 7062545 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 2R_7064543_7065075 2R 7064543 7065075 CG9015 en 20426 1.303462322 7064653 3.501 7064653 6.753263708 7064653 0 1 0 0 0 1 1 1 1 1 1 2 2 2 2 2 2 0 0 0 0 0 0 2R_7113561_7114390 2R 7113561 7114390 CG10897 tou transcript overlap 1.361507128 7113660 4.054 7113940 8.296344648 7113940 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_7131854_7132607 2R 7131854 7132607 CG10897 tou 116 2.352342159 7132166 5.591 7132166 8.920365535 7132166 1 0 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2R_7309632_7312483 2R 7309632 7312483 CG12443 ths transcript overlap 9.596741344 7310198 16.57 7310198 24.45561358 7310198 1 0 1 0 1 "Stathopoulos et al., 2002" 3 2 2 1 1 1 4 3 3 3 3 2 5 3 3 3 1 1 2R_7970419_7971243 2R 7970419 7971243 CG12369 Lac transcript overlap 2.210794297 7971073 4.528 7971073 6.740208877 7971073 1 0 0 0 0 1 1 1 1 0 0 3 3 3 1 0 0 1 0 0 0 0 0 2R_8046410_8046931 2R 8046410 8046931 CG8581 fra transcript overlap 1.434826884 8046768 3.357 8046768 6.822454308 8046768 0 1 0 0 0 3 2 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2R_8273469_8274086 2R 8273469 8274086 CG8657 Dgkepsilon transcript overlap 1.849287169 8273509 2.387 8273649 5.528720627 8273649 0 1 0 0 0 2 2 2 1 0 0 3 3 2 2 0 0 0 0 0 0 0 0 2R_8291749_8293745 2R 8291749 8293745 CG17579 sca 2706 1.609979633 8292655 4.191 8292977 6.285900783 8292977 0 1 0 0 1 "Mlodzik et al., 1990; Stathopoulos et al., 2002 " 2 2 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_8295676_8296548 2R 8295676 8296548 CG17579 sca TSS overlap 2.50101833 8296449 6.74 8296065 7.473890339 8296065 1 0 0 0 1 "Mlodzik et al., 1990; Stathopoulos et al., 2002 " 2 2 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2R_8709545_8711452 2R 8709545 8711452 CG33182 CG33182 transcript overlap 2.378818737 8710493 12.067 8711003 17.70104439 8711003 1 0 0 0 0 2 2 1 1 0 0 2 1 0 0 0 0 4 2 2 2 0 0 2R_8739452_8740769 2R 8739452 8740769 CG4654 Dp transcript overlap 1.712830957 8740321 10.435 8740321 13.12010444 8740321 0 1 0 0 0 4 2 1 1 1 0 4 2 1 0 0 0 0 0 0 0 0 0 2R_8963542_8964890 2R 8963542 8964890 CG4832 cnn transcript overlap 1.877800407 8963652 6.314 8963929 14.39033943 8963929 0 1 0 0 0 6 4 4 1 1 0 5 5 3 1 1 0 0 0 0 0 0 0 2R_8965221_8966408 2R 8965221 8966408 CG4832 cnn TSS overlap 2.027494908 8966308 5.633 8966029 3.25848564 8966029 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_9061177_9062894 2R 9061177 9062894 CG6145 CG6145 transcript overlap 12.55397149 9062396 4.302 9061846 5.792428198 9061427 1 0 0 0 0 6 3 1 0 0 0 8 4 0 0 0 0 1 0 0 0 0 0 2R_9075642_9080916 2R 9075642 9080916 CG13334 CG13334 1190 6.922606925 9077072 24.31 9077072 25.65143603 9077072 1 0 0 0 0 5 0 0 0 0 0 10 0 0 0 0 0 8 0 0 0 0 0 2R_9081261_9087419 2R 9081261 9087419 CG13335 CG13335 2717 4.798370672 9085974 15.428 9085974 18.25326371 9085974 1 0 0 0 0 6 0 0 0 0 0 8 0 0 0 0 0 13 0 0 0 0 0 2R_9095295_9096135 2R 9095295 9096135 CG13335 CG13335 5159 4.66802444 9095685 6.884 9095685 9.911227154 9095685 1 0 0 0 0 2 2 2 0 0 0 4 4 4 1 0 0 2 0 0 0 0 0 2R_9136112_9137532 2R 9136112 9137532 CG17716 fas 1463 2.556008147 9136502 4.083 9137362 6.343342037 9137362 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 0 0 2R_9138085_9138854 2R 9138085 9138854 CG17716 fas 141 1.389002037 9138685 4.083 9138685 7.889033943 9138429 0 1 0 0 0 3 3 3 2 2 0 2 1 1 1 1 0 1 0 0 0 0 0 2R_9370096_9370451 2R 9370096 9370451 CG6543 CG6543 TSS overlap 1.760692464 9370274 4.237 9370274 7.62924282 9370274 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_9426846_9427332 2R 9426846 9427332 CG18076 shot transcript overlap 2.511201629 9426882 3.307 9427162 6.531331593 9427162 1 0 0 0 0 3 3 2 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 2R_9441043_9441861 2R 9441043 9441861 CG18076 shot transcript overlap 1.071283096 9441340 3.019 9441412 6.657963446 9441340 0 1 0 0 0 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 2R_9821946_9823356 2R 9821946 9823356 CG8589 CG8589 4730 1.910386965 9823206 3.855 9822060 5.65535248 9822060 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2R_9826089_9827973 2R 9826089 9827973 CG8589 CG8589 8873 1.563136456 9826734 4.314 9826734 6.780678851 9826734 0 1 0 0 0 2 1 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 2R_9945348_9946715 2R 9945348 9946715 CG10108 phyl transcript overlap 2.032586558 9946017 12.537 9946017 21.67624021 9946017 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3 0 0 0 0 0 2R_10072028_10072562 2R 10072028 10072562 CG10117 ttv transcript overlap 0.898167006 10072138 3.852 10072395 5.234986945 10072395 0 1 0 0 0 3 3 3 3 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2R_10496314_10497681 2R 10496314 10497681 CG7761 pcs transcript overlap 1.764278297 10497189 5.139774859 10496352 4.997171146 10496352 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_10645614_10646140 2R 10645614 10646140 CG11798 chn transcript overlap 1.823468328 10645722 2.693245779 10645722 5.623762376 10645722 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 2R_10647355_10647634 2R 10647355 10647634 CG11798 chn transcript overlap 2.177570093 10647464 6.409005629 10647464 10.93635078 10647464 1 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 2R_10751610_10751860 2R 10751610 10751860 CG33466 Fs transcript overlap 1.31152648 10751720 2.976547842 10751720 7.052333805 10751720 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_11189917_11191440 2R 11189917 11191440 CG8205 fus transcript overlap 1.273104881 11190556 5.475609756 11190556 9.73125884 11190556 0 1 0 0 0 5 3 3 1 0 0 3 2 2 1 0 0 1 0 0 0 0 0 2R_11214388_11215170 2R 11214388 11215170 CG30080 CG30080 transcript overlap 2.452751817 11214794 4.490619137 11214794 7.131541726 11214794 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_11249825_11250659 2R 11249825 11250659 CG30089 CG30089 transcript overlap 3.176531672 11250215 13.55253283 11250215 27.47524752 11250215 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 2R_11251137_11251464 2R 11251137 11251464 CG30089 CG30089 transcript overlap 1.586708204 11251240 5.313320826 11251240 8.240452617 11251240 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_11262839_11263118 2R 11262839 11263118 CG30089 CG30089 transcript overlap 2.385254413 11262948 4.661350844 11262948 5.801980198 11262948 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_11270050_11271893 2R 11270050 11271893 CG30089 CG30089 transcript overlap 2.689511942 11270685 7.628517824 11270685 15.28571429 11270685 1 0 0 0 0 4 4 1 1 1 0 1 1 1 0 0 0 3 0 0 0 0 0 2R_11282061_11282521 2R 11282061 11282521 CG30084 tun transcript overlap 1.115264798 11282386 12.76266417 11282386 20.61669024 11282386 0 1 0 0 0 5 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2R_11304961_11306011 2R 11304961 11306011 CG30084 tun transcript overlap 4.683281412 11305344 7.971857411 11305562 21.67892504 11305562 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_11331743_11332279 2R 11331743 11332279 CG30084 tun 71 1.421599169 11332109 4.785178236 11332109 7.554455446 11332109 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_11380733_11381573 2R 11380733 11381573 CG30085 CG30085 transcript overlap 1.966770509 11381123 6.700750469 11381123 11.25459689 11381123 0 1 0 0 0 4 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_11387916_11388994 2R 11387916 11388994 CG8355 sli transcript overlap 1.125649013 11388069 5.89587242 11388555 8.889674682 11388555 0 1 0 0 0 4 4 4 3 2 2 2 2 2 1 0 0 0 0 0 0 0 0 2R_11405557_11406936 2R 11405557 11406936 CG8355 sli TSS overlap 3.225337487 11405793 5.806754221 11405932 12.59405941 11405932 1 0 0 0 0 2 2 1 0 0 0 2 1 1 0 0 0 3 0 0 0 0 0 2R_11412702_11413494 2R 11412702 11413494 CG33463 CG33463 1412 1.773624091 11412779 3.334896811 11413036 5.234794908 11413036 0 1 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 2R_11418735_11419974 2R 11418735 11419974 CG33463 CG33463 7445 1.703011423 11419429 3.267354597 11419429 7.61669024 11419429 0 1 0 0 0 2 0 0 0 0 0 4 1 1 0 0 0 1 1 0 0 0 0 2R_11702084_11702620 2R 11702084 11702620 CG8443 CG8443 transcript overlap 1.724818276 11702450 4.076923077 11702450 5.14427157 11702450 0 1 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2R_11845878_11846374 2R 11845878 11846374 CG8048 Vha44 transcript overlap 1.417445483 11845988 2.384615385 11845988 5.664780764 11846227 0 1 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_11988174_11989058 2R 11988174 11989058 CG33524 CG33524 5102 1.509865005 11988608 6.805816135 11988608 11.69306931 11988608 0 1 0 0 0 3 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_11994456_11994800 2R 11994456 11994800 CG15712 CG15712 5603 1.126687435 11994565 3.222326454 11994565 5.820367751 11994565 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2R_12029387_12030420 2R 12029387 12030420 CG4700 Sema-2a transcript overlap 2.040498442 12029970 5.014071295 12029970 9.473833098 12029970 1 0 0 0 0 4 2 2 0 0 0 3 2 2 1 1 0 1 0 0 0 0 0 2R_12031904_12032372 2R 12031904 12032372 CG4700 Sema-2a transcript overlap 1.497403946 12032202 3.132270169 12032202 5.291371994 12032202 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_12095055_12095956 2R 12095055 12095956 CG5072 Cdk4 transcript overlap 2.11007269 12095506 10.77204503 12095506 18.29561528 12095506 1 0 0 0 0 1 1 0 0 0 0 3 3 1 0 0 0 1 0 0 0 0 0 2R_12154620_12155982 2R 12154620 12155982 CG18471 gprs 121 1.561786085 12154995 8.268292683 12154995 16.69306931 12154995 0 1 0 0 0 2 1 1 1 1 1 2 2 2 1 1 1 0 0 0 0 0 0 2R_12245496_12246515 2R 12245496 12246515 CG30463 CG30463 TSS overlap 2.523364486 12246435 2.69043152 12246203 5.742574257 12246203 1 0 0 0 0 2 2 2 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2R_12973025_12973886 2R 12973025 12973886 CG14478 CG14478 transcript overlap 2.05192108 12973134 5.882739212 12973414 9.5572843 12973694 1 0 0 0 0 4 3 3 2 1 0 3 3 2 1 1 1 1 1 1 1 1 1 2R_12976135_12977313 2R 12976135 12977313 CG14478 CG14478 transcript overlap 2.003115265 12976583 4.454971857 12976583 6.289957567 12976466 1 0 0 0 0 3 3 3 0 0 0 3 3 3 2 0 0 0 0 0 0 0 0 2R_13193846_13195739 2R 13193846 13195739 CG6446 Sema-1b transcript overlap 5.695742471 13194771 9.405253283 13194771 14.73833098 13195013 1 0 0 0 0 3 2 2 1 1 1 1 1 0 0 0 0 2 0 0 0 0 0 2R_13230913_13231751 2R 13230913 13231751 CG6424 CG6424 transcript overlap 1.94807892 13231583 4.930581614 13231303 10.2758133 13231303 0 1 0 0 0 1 1 1 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 2R_13315948_13317240 2R 13315948 13317240 CG5058 grh 412 2.115264798 13316585 16.89587242 13316585 32.47524752 13316585 1 0 0 0 0 3 1 1 1 1 0 2 1 1 1 0 0 0 0 0 0 0 0 2R_13318496_13319273 2R 13318496 13319273 CG5058 grh transcript overlap 1.424714434 13318576 4.834896811 13319103 8.868458274 13319103 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_13328466_13329079 2R 13328466 13329079 CG5058 grh transcript overlap 1.137071651 13328927 4.161350844 13328927 9.231966054 13328927 0 1 0 0 0 3 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 2R_13407121_13409028 2R 13407121 13409028 CG5076 elk transcript overlap 1.919003115 13408261 5.317073171 13408039 11.72984441 13408039 0 1 0 0 0 4 0 0 0 0 0 8 4 3 1 0 0 2 0 0 0 0 0 2R_13750342_13750622 2R 13750342 13750622 CG10917 fj transcript overlap 1.046728972 13750452 3.409005629 13750452 5.632248939 13750452 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_13814444_13815451 2R 13814444 13815451 CG18540 CG18540 123 2.453790239 13814760 4.592870544 13814760 10.44978784 13814760 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_14025929_14026486 2R 14025929 14026486 CG5226 CG5226 2953 1.171339564 14026039 3.183864916 14026307 5.618104668 14026307 0 1 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_14079373_14079866 2R 14079373 14079866 CG30115 CG30115 2875 3.425752856 14079697 3.939962477 14079697 5.487977369 14079697 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_14180880_14181443 2R 14180880 14181443 CG33136 CG33136 272 2.005192108 14181270 4.293621013 14180990 8.325318246 14180990 1 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 2R_14192186_14193556 2R 14192186 14193556 CG15085 edl 3791 1.580477674 14192567 4.394934334 14193106 8.561527581 14193106 0 1 0 0 0 1 1 1 1 1 1 5 4 4 3 3 2 0 0 0 0 0 0 2R_14311109_14311941 2R 14311109 14311941 CG15094 CG15094 TSS overlap 2.479750779 14311779 2.177298311 14311606 5.032531825 14311499 1 0 0 0 0 5 1 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 2R_14317126_14318002 2R 14317126 14318002 CG15095 l(2)08717 transcript overlap 2.08411215 14317164 4.623827392 14317566 7.868458274 14317566 1 0 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 2R_14481615_14482162 2R 14481615 14482162 CG18608 prod 3852 1.167185877 14481725 3.813320826 14481992 6.635077793 14481725 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_14777429_14777944 2R 14777429 14777944 CG7229 CG7229 2652 1.303219107 14777524 4.434333959 14777524 9.212164074 14777524 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_14780051_14782739 2R 14780051 14782739 CG7229 CG7229 5274 2.326064382 14782290 4.187617261 14782290 7.314002829 14782290 1 0 0 0 0 5 3 3 2 2 0 6 6 4 3 2 0 3 0 0 0 0 0 2R_14791526_14792043 2R 14791526 14792043 CG7230 rib transcript overlap 2.119418484 14791636 6.301125704 14791906 6.973125884 14791906 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_14807580_14808609 2R 14807580 14808609 CG7417 Tab2 transcript overlap 1.705088266 14808151 3.495309568 14807871 7.231966054 14808151 0 1 0 0 0 6 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 2R_15006431_15008007 2R 15006431 15008007 CG8432 CG11237 Rep Oseg6 TSS overlap 1.440290758 15007563 3.226078799 15006896 5.947666195 15006896 0 1 0 0 0 6 4 1 0 0 0 7 5 5 2 0 0 2 2 0 0 0 0 2R_15173930_15177117 2R 15173930 15177117 CR33039 CR33038 CR33037 CR33036 CR33561 CR33602 CR33004 CR33040 CR33613 mir-6-3 mir-4 mir-3 mir-5 mir-4S mir-286 mir-6-1 mir-6-2 mir-309 TSS overlap 7.868120457 15174320 3.023452158 15176947 6.879773692 15175065 1 0 0 0 0 5 3 1 0 0 0 5 3 1 1 0 0 3 0 0 0 0 0 2R_15355500_15356230 2R 15355500 15356230 CG8595 Toll-7 13732 1.35721703 15355806 3.055347092 15355596 5.72135785 15355806 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 1 0 0 0 2R_15372344_15373174 2R 15372344 15373174 CG30448 Obp56i 9805 1.417445483 15372451 1.965290807 15372727 5.148514851 15372727 0 1 0 0 0 1 1 1 1 0 0 3 3 3 2 1 0 2 0 0 0 0 0 2R_15395780_15396401 2R 15395780 15396401 CG13872 CG13872 TSS overlap 1.55867082 15395820 2.203564728 15395960 5.216407355 15395960 0 1 0 0 0 1 1 1 1 0 0 2 2 2 0 0 0 1 0 0 0 0 0 2R_15479699_15480503 2R 15479699 15480503 CG10822 CG10822 13381 1.187954309 15480083 2.272045028 15480083 5.684582744 15480083 0 1 0 0 0 1 1 1 1 0 0 3 3 3 3 0 0 0 0 0 0 0 0 2R_15493717_15494246 2R 15493717 15494246 CG8654 CG8654 1686 1.706126687 15494078 3.502814259 15494078 7.14427157 15494078 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_15549864_15550916 2R 15549864 15550916 CG16898 CG16898 30014 3.704049844 15550247 9.505628518 15550247 17.93776521 15550247 1 0 0 0 0 4 4 3 3 2 2 5 5 4 3 2 1 0 0 0 0 0 0 2R_15554981_15556905 2R 15554981 15556905 CG16898 CG16898 35131 1.496365524 15556183 3.821763602 15556183 6.380480905 15556183 0 1 0 0 0 6 6 4 2 0 0 8 5 4 2 2 1 3 2 2 1 0 0 2R_15563952_15565803 2R 15563952 15565803 CG16898 CG16898 44102 1.573208723 15564310 5.135084428 15564310 8.943422914 15564310 0 1 0 0 0 1 0 0 0 0 0 3 3 2 1 0 0 0 0 0 0 0 0 2R_15566162_15567578 2R 15566162 15567578 CG16898 CG16898 46312 1.91588785 15566849 6.263602251 15566849 11.20650636 15566849 0 1 0 0 0 2 1 1 1 1 0 2 1 1 1 1 1 0 0 0 0 0 0 2R_15571095_15572201 2R 15571095 15572201 CG16898 CG16898 51245 3.471443406 15571484 9.80206379 15571484 16.58698727 15571764 1 0 0 0 0 1 0 0 0 0 0 2 2 1 1 1 1 1 0 0 0 0 0 2R_15580496_15582363 2R 15580496 15582363 CG8896 18w 44011 1.660436137 15581681 5.139774859 15581681 9.045261669 15581681 0 1 0 0 0 2 1 1 1 0 0 2 2 2 2 2 2 4 1 0 0 0 0 2R_15586886_15587959 2R 15586886 15587959 CG8896 18w 38415 2.223260644 15587237 5.919324578 15587237 9.652050919 15587237 1 0 0 0 0 2 2 2 1 1 1 1 1 1 0 0 0 1 1 1 1 1 0 2R_15842680_15843467 2R 15842680 15843467 CG8929 CG8929 transcript overlap 2.548286604 15843051 3.253283302 15843051 6.411598303 15843051 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_16053808_16054365 2R 16053808 16054365 CG13427 CG13427 TSS overlap 2.517133956 16054198 8.19043152 16054198 13.60254597 16054198 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_16115237_16116344 2R 16115237 16116344 CG13425 bl transcript overlap 1.54517134 16115347 3.061913696 16115907 5.888260255 16115907 0 1 0 0 0 3 3 3 2 1 1 4 3 2 2 2 1 0 0 0 0 0 0 2R_16118521_16119851 2R 16118521 16119851 CG13425 bl transcript overlap 2.985462098 16118631 5.509380863 16119124 8.777934936 16119124 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 1 1 1 0 0 2R_16160808_16161924 2R 16160808 16161924 CG11132 DMAP1 1907 2.12357217 16161197 2.865853659 16161754 5.166902405 16161754 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_16353398_16354169 2R 16353398 16354169 CG17999 CG17999 3332 1.322949117 16353776 3.872420263 16353776 6.534653465 16353776 0 1 0 0 0 2 1 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 2R_16366703_16367820 2R 16366703 16367820 CG15227 CG15227 5863 1.421599169 16367090 3.917448405 16367090 8.429985856 16367090 0 1 0 0 0 2 2 1 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 2R_16468195_16470337 2R 16468195 16470337 CG33152 hbn TSS overlap 2.142263759 16469918 4.140712946 16468580 7.026874116 16469918 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_16555324_16556794 2R 16555324 16556794 CG3722 shg 7947 2.90238837 16555875 17.67073171 16555875 28.89674682 16555875 1 0 0 0 0 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 0 2R_16649216_16649771 2R 16649216 16649771 CG30388 Magi transcript overlap 1.399792316 16649604 3.32739212 16649604 6.04950495 16649604 0 1 0 0 0 2 1 1 0 0 0 5 3 0 0 0 0 2 1 0 0 0 0 2R_16690262_16690540 2R 16690262 16690540 CR30210 CR30209 tRNA:G3:57BCb CR30209 TSS overlap 2.577362409 16690372 3.290806754 16690372 5.625176803 16690372 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16757974_16759288 2R 16757974 16759288 CG18375 CG18375 TSS overlap 4.919003115 16758522 26.59662289 16758522 41.18387553 16758522 1 0 0 0 0 4 2 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2R_16871284_16872649 2R 16871284 16872649 CG15671 cv-2 transcript overlap 1.619937695 16872176 3.14727955 16871634 6.528995757 16872176 0 1 0 0 1 "Biemar et al., 2006" 3 2 2 2 1 0 2 1 0 0 0 0 1 0 0 0 0 0 2R_16933514_16934294 2R 16933514 16934294 CG10497 Sdc transcript overlap 2.133956386 16933846 4.371482176 16933846 10.56152758 16933846 1 0 0 0 0 2 2 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_16974027_16974778 2R 16974027 16974778 CG10497 Sdc transcript overlap 2.924195223 16974402 4.350844278 16974137 9.939179632 16974402 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_16982239_16983002 2R 16982239 16983002 CG10497 Sdc transcript overlap 1.745586708 16982349 2.907129456 16982349 6.209335219 16982349 0 1 0 0 0 1 1 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 2R_16983918_16985229 2R 16983918 16985229 CG10497 Sdc transcript overlap 1.843198339 16985059 5.434333959 16984488 9.007072136 16984488 0 1 0 0 0 1 0 0 0 0 0 2 1 1 1 0 0 1 1 0 0 0 0 2R_17009707_17010319 2R 17009707 17010319 CG15669 MESK2 transcript overlap 1.281412253 17010022 2.540337711 17010022 5.469589816 17010022 0 1 0 0 0 3 2 2 2 2 1 3 3 3 1 0 0 0 0 0 0 0 0 2R_17031153_17033313 2R 17031153 17033313 CG10079 Egfr transcript overlap 2.68847352 17031531 7.643527205 17031531 11.92927864 17031531 1 0 0 0 0 3 3 2 2 0 0 2 1 1 1 0 0 4 1 0 0 0 0 2R_17051799_17054492 2R 17051799 17054492 CG10079 Egfr transcript overlap 4.232606438 17052990 10.5750469 17052990 21.64780764 17052990 1 0 0 0 0 4 2 1 1 0 0 4 3 2 2 0 0 1 0 0 0 0 0 2R_17153169_17154293 2R 17153169 17154293 CG10082 CG10082 TSS overlap 2.206645898 17154112 6.153846154 17153695 12.5049505 17153695 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 2 0 0 0 0 0 2R_17214975_17216016 2R 17214975 17216016 CG17921 HmgZ 2905 2.667705088 17215307 6.5684803 17215577 11.1612447 17215307 1 0 0 0 0 3 2 2 2 1 1 2 1 1 1 1 0 0 0 0 0 0 0 2R_17749776_17751105 2R 17749776 17751105 CG5799 dve 440 1.562824507 17749889 5.909005629 17750729 17.74823197 17750729 0 1 0 0 0 0 0 0 0 0 0 3 2 2 2 2 2 3 2 0 0 0 0 2R_17824826_17826419 2R 17824826 17826419 CG5820 Gp150 TSS overlap 2.050882658 17824936 5.942776735 17825298 9.732673267 17825298 1 0 0 0 0 3 2 2 0 0 0 3 2 2 0 0 0 3 0 0 0 0 0 2R_17915649_17916796 2R 17915649 17916796 CG33200 ventrally-expressed-protein-D TSS overlap 4.421599169 17916297 7.02532833 17916144 4.615275813 17916144 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_18013133_18014272 2R 18013133 18014272 CG4444 px transcript overlap 2.257528557 18013520 3.577861163 18013800 5.182461103 18013520 1 0 0 0 0 3 3 2 2 0 0 2 2 1 1 0 0 2 1 1 1 0 0 2R_18014966_18015721 2R 18014966 18015721 CG4444 px transcript overlap 2.225337487 18015302 3.489681051 18015302 6.118811881 18015302 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18196073_18199847 2R 18196073 18199847 CG9952 ppa TSS overlap 4.12357217 18196636 9.401500938 18198346 12.61669024 18198346 1 0 0 0 0 3 0 0 0 0 0 7 2 1 0 0 0 0 0 0 0 0 0 2R_18235979_18237083 2R 18235979 18237083 CG30092 jbug transcript overlap 1.329179647 18236621 3.097560976 18236900 6.101838755 18236900 0 1 0 0 0 3 2 2 2 1 0 1 1 1 1 1 1 1 0 0 0 0 0 2R_18552484_18552954 2R 18552484 18552954 CG2956 twi 754 2.699896158 18552784 2.935272045 18552784 5.005657709 18552784 1 0 0 0 1 "Jiang et al., 1991" 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 1 0 0 2R_18553474_18554632 2R 18553474 18554632 CG2956 twi TSS overlap 2.939771547 18554075 3.554409006 18553672 5.574257426 18553672 1 0 1 0 1 "Jiang et al., 1991" 2 2 1 1 0 0 1 1 0 0 0 0 3 2 1 1 0 0 2R_18695135_18695974 2R 18695135 18695974 CG13539 CG13539 3127 5.251298027 18695244 5.703564728 18695244 8.142857143 18695244 1 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2R_18713796_18715155 2R 18713796 18715155 CG3162 CG3162 3984 2.559709242 18714705 4.835834897 18714705 7.130127298 18714445 1 0 0 0 0 1 1 0 0 0 0 3 2 1 0 0 0 2 2 2 0 0 0 2R_19080267_19082487 2R 19080267 19082487 CG5393 apt transcript overlap 2.244029076 19080992 21.62945591 19080853 53.14851485 19080853 1 0 0 0 0 3 2 2 2 2 1 7 7 5 2 2 1 0 0 0 0 0 0 2R_19146580_19147413 2R 19146580 19147413 CG5403 retn transcript overlap 3.07788162 19146967 7.678236398 19146967 13.20933522 19146967 1 0 0 0 0 1 1 1 1 1 0 4 3 2 2 1 0 0 0 0 0 0 0 2R_19152619_19154213 2R 19152619 19154213 CG5403 retn transcript overlap 1.733125649 19153558 5.286116323 19153558 9.888260255 19153558 0 1 0 0 0 3 3 2 0 0 0 6 4 4 2 1 0 6 4 2 1 0 0 2R_19253101_19254369 2R 19253101 19254369 CG4051 egl transcript overlap 2.937694704 19253211 3.317073171 19253479 6.086280057 19253479 1 0 0 0 0 4 0 0 0 0 0 6 1 0 0 0 0 2 0 0 0 0 0 2R_19494333_19495879 2R 19494333 19495879 CG3832 Phm transcript overlap 2.949117342 19495710 2.591932458 19495430 5.240452617 19494652 1 0 1 0 1 "Markstein et al., 2004" 5 1 0 0 0 0 2 1 0 0 0 0 4 0 0 0 0 0 2R_19575911_19576708 2R 19575911 19576708 CG4005 CG3209 CG4005 CG3209 TSS overlap 10.79023884 19576422 4.01782364 19576053 5.647807638 19576053 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2R_20051115_20051783 2R 20051115 20051783 CG13586 CG4622 itp CG4622 transcript overlap 1.384215992 20051142 4.318011257 20051401 7.674681754 20051614 0 1 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2R_20321033_20322290 2R 20321033 20322290 CG3629 Dll 140 1.334371755 20321122 7.219512195 20321669 21.03253182 20321669 0 1 0 0 0 3 2 2 2 1 1 1 1 1 0 0 0 4 0 0 0 0 0 2R_20352101_20352911 2R 20352101 20352911 CG3650 CG3650 3665 1.69470405 20352462 5.039399625 20352462 9.236209335 20352462 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_20389985_20390825 2R 20389985 20390825 CG9047 CG9047 transcript overlap 1.3894081 20390375 3.491557223 20390375 9.388967468 20390375 0 1 0 0 0 2 2 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2R_20552620_20553456 2R 20552620 20553456 CG2692 gsb-n transcript overlap 1.169262721 20553286 3.57879925 20553010 6.734087694 20553010 0 1 0 0 0 1 1 1 1 1 0 4 4 4 4 4 2 0 0 0 0 0 0 2R_20558258_20559098 2R 20558258 20559098 CG2692 gsb-n transcript overlap 1.494288681 20558648 5.090056285 20558648 8.482319661 20558648 0 1 0 0 0 1 1 1 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 2R_20562002_20562826 2R 20562002 20562826 CG2692 gsb-n 2075 1.001038422 20562376 3.253283302 20562376 6.45261669 20562376 0 1 0 0 0 2 1 1 0 0 0 3 2 2 1 0 0 0 0 0 0 0 0 2R_20564456_20565235 2R 20564456 20565235 CG3388 gsb 4345 1.335410177 20564844 4.332082552 20564566 7.629420085 20564844 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 2R_20572795_20573628 2R 20572795 20573628 CG3388 gsb 3215 1.518172378 20573183 4.653846154 20573183 8.069306931 20573183 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_20605829_20606321 2R 20605829 20606321 CG16778 Tkr transcript overlap 1.8701973 20606130 5.751407129 20606130 9.446958982 20606130 0 1 0 0 0 3 3 3 2 2 2 3 2 1 1 0 0 0 0 0 0 0 0 3L_5178_11229 3L 5178 11229 CG32475 mthl8 TSS overlap 1.398753894 10124 6.227954972 5642 1.841584158 6247 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 3L_31243_31748 3L 31243 31748 CG6821 Lsp1gamma 18222 1.565939772 31353 3.138836773 31586 7.074964639 31586 0 1 0 0 0 3 2 2 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_596647_597738 3L 596647 597738 CG3200 Reg-2 6557 2.284221526 597568 4.372591006 597568 7.099855282 597568 1 0 0 0 0 2 1 1 0 0 0 3 2 1 0 0 0 3 2 1 0 0 0 3L_604880_605428 3L 604880 605428 CG32345 CG32345 transcript overlap 2.007314525 604981 11.54175589 605258 14.39797395 605258 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_709774_710810 3L 709774 710810 CG13897 CG13897 11842 1.274817137 710164 6.585653105 710164 4.861070912 710164 0 1 0 0 0 0 0 0 0 0 0 7 6 4 4 2 2 1 1 0 0 0 0 3L_718850_719380 3L 718850 719380 CG13897 CG13897 3272 1.531870428 718932 3.310492505 718932 5.208393632 718932 0 1 0 0 0 1 1 1 1 1 0 2 2 2 2 2 1 1 1 1 1 1 1 3L_722704_723957 3L 722704 723957 CG13897 CG13897 52 4.75862069 723274 19.04389722 723274 26.55571635 723274 1 0 0 0 0 4 4 4 4 3 1 6 5 4 4 3 3 1 1 0 0 0 0 3L_725651_729215 3L 725651 729215 CR32482 tRNA:M-i:61D TSS overlap 4.510971787 726875 7.884368308 726875 9.493487699 726875 1 0 0 0 0 4 3 2 2 2 2 10 9 5 5 3 2 2 0 0 0 0 0 3L_732910_733380 3L 732910 733380 CG1007 emc TSS overlap 3.299895507 733220 1.870449679 732949 5.76845152 733220 1 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 3L_736881_737721 3L 736881 737721 CG1007 emc 3943 5.945663532 737307 4.062098501 737028 7.247467438 737307 1 0 0 0 0 2 1 1 1 1 1 3 3 3 3 3 3 2 2 2 1 1 1 3L_855610_856436 3L 855610 856436 CG32479 CG32479 transcript overlap 4.616509927 856005 4.898286938 856005 7.111432706 856005 1 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3L_888653_889738 3L 888653 889738 CG13905 CG13905 2190 2.66353187 889321 6.374732334 889321 4.89869754 889321 1 0 0 0 0 2 2 2 1 1 1 1 1 1 0 0 0 1 0 0 0 0 0 3L_891882_892789 3L 891882 892789 CG13906 nerfin-1 TSS overlap 1.463949843 891992 2.829764454 892272 5.387843705 892272 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_1439750_1440303 3L 1439750 1440303 CG1004 rho 7021 2.056426332 1440134 4.734475375 1440134 8.641099855 1440134 1 0 0 0 1 "Ip et al., 1992" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_1445100_1446447 3L 1445100 1446447 CG1004 rho 877 9.863113898 1445485 16.30620985 1445485 28.56150507 1445485 1 0 1 0 1 "Ip et al., 1992" 3 2 2 2 1 0 4 4 4 4 4 0 5 3 3 1 0 0 3L_1462564_1463204 3L 1462564 1463204 CG33166 CG32331 stet CG32331 transcript overlap 2.131661442 1462750 3.131691649 1462750 5.541244573 1462750 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 1 1 0 3L_1499906_1500750 3L 1499906 1500750 CG12086 CG1009 cue Psa transcript overlap 2.101358412 1500669 3.579229122 1500567 5.13024602 1500567 1 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_1700886_1701443 3L 1700886 1701443 CG2086 drpr transcript overlap 1.307210031 1700993 3.701284797 1700993 5.654124457 1701273 0 1 0 0 0 2 2 2 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_1718881_1719716 3L 1718881 1719716 CG2069 Oseg4 TSS overlap 1.145245559 1719266 5.840471092 1719128 8.396526773 1719266 0 1 0 0 0 3 1 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 3L_2420910_2422897 3L 2420910 2422897 CG32306 CG32306 transcript overlap 2.421107628 2422163 5 2422443 6.748191027 2422163 1 0 0 0 0 "Levine lab, unpublished" 2 2 2 2 2 1 2 1 1 1 1 0 4 2 1 0 0 0 3L_2460539_2461069 3L 2460539 2461069 CG33232 CG16761 CG33232 Cyp4d20 transcript overlap 0.792058516 2460643 3.805139186 2460643 6.897250362 2460643 0 1 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 2 2 0 0 0 0 3L_2466234_2467042 3L 2466234 2467042 CG33232 CG33232 transcript overlap 2.059561129 2466619 6.154175589 2466757 9.299565847 2466757 1 0 0 0 0 3 3 3 1 0 0 1 1 0 0 0 0 2 0 0 0 0 0 3L_2863961_2866611 3L 2863961 2866611 CG9973 CG9973 8719 3.31138976 2866187 6.609207709 2866187 9.201157742 2866187 1 0 0 0 1 "Biemar et al., 2006" 2 0 0 0 0 0 2 1 1 0 0 0 6 1 1 1 1 1 3L_3020623_3022008 3L 3020623 3022008 CG2162 CG2162 transcript overlap 1.943573668 3021564 3.7751606 3021564 6.80463097 3021564 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_3147812_3149190 3L 3147812 3149190 CG14962 CG14962 transcript overlap 3.091954023 3148197 11.00642398 3148197 17.50795948 3148197 1 0 0 0 0 7 5 2 0 0 0 4 3 1 1 1 0 2 0 0 0 0 0 3L_3320687_3320967 3L 3320687 3320967 CG32268 dro6 793 1.76384535 3320797 3.667023555 3320797 6.0723589 3320797 0 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_3387415_3387967 3L 3387415 3387967 CG1921 sty transcript overlap 1.576802508 3387819 6.583511777 3387539 11.9536903 3387539 0 1 0 0 0 5 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_3392148_3393969 3L 3392148 3393969 CG1921 sty transcript overlap 2.409613375 3393829 7.037473233 3393612 9.529667149 3393612 1 0 0 0 0 3 0 0 0 0 0 9 1 0 0 0 0 3 0 0 0 0 0 3L_3829182_3829771 3L 3829182 3829771 CG1072 Awh TSS overlap 1.928944619 3829537 5.301927195 3829537 3.19536903 3829537 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_3926811_3928147 3L 3926811 3928147 CG14982 CG14982 transcript overlap 1.242424242 3927776 4.576017131 3927481 8.850940666 3927481 0 1 0 0 0 6 6 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4153565_4154216 3L 4153565 4154216 CG1333 Ero1L TSS overlap 1.854754441 4153605 3.255888651 4153833 7.060781476 4153833 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4213739_4214849 3L 4213739 4214849 CG15009 ImpL2 transcript overlap 1.333333333 4214129 9.592077088 4214409 11.31693198 4214409 0 1 0 0 0 2 0 0 0 0 0 3 3 2 1 0 0 1 1 1 1 1 0 3L_4391380_4392457 3L 4391380 4392457 CG11347 CG11347 transcript overlap 1.214211076 4392314 6.276231263 4391770 8.030390738 4391770 0 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 3L_4531344_4532787 3L 4531344 4532787 CG11357 CG11357 transcript overlap 1.732497388 4531795 3.033190578 4531515 5.386396527 4531515 0 1 0 0 0 5 2 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 3L_4675376_4676209 3L 4675376 4676209 CG32239 Gef64C transcript overlap 3.476489028 4675766 9.647751606 4675766 14.0130246 4675766 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_4676971_4678546 3L 4676971 4678546 CG32239 Gef64C transcript overlap 3.458725183 4677361 4.749464668 4677361 11.93777135 4677361 1 0 0 0 0 2 2 1 0 0 0 1 1 1 0 0 0 3 1 1 1 1 0 3L_4840594_4840874 3L 4840594 4840874 CG32235 CG32235 443 0.997910136 4840704 3.311563169 4840704 5.353111433 4840704 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4957118_4957595 3L 4957118 4957595 CG7503 Con 99 9.254963427 4957156 4.069593148 4957426 8.037626628 4957426 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_5365940_5366188 3L 5365940 5366188 CG10633 CG10633 9172 1.34169279 5366018 6.155246253 5366018 9.146164978 5366018 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_5594800_5595640 3L 5594800 5595640 CG5249 Blimp-1 9290 1.845350052 5595190 5.420770878 5595190 8.836468886 5595190 0 1 0 0 0 2 2 1 1 1 0 3 1 1 1 1 0 0 0 0 0 0 0 3L_5604443_5605243 3L 5604443 5605243 CG5249 Blimp-1 TSS overlap 2.512016719 5604802 7.161670236 5604802 10.66714906 5604802 1 0 0 0 0 3 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_5607710_5608831 3L 5607710 5608831 CG5249 Blimp-1 transcript overlap 1.841170324 5608374 7.582441113 5608374 11.37047757 5608374 0 1 0 0 0 2 2 2 1 1 0 2 2 1 0 0 0 0 0 0 0 0 0 3L_5809480_5810317 3L 5809480 5810317 CG10491 vn transcript overlap 4.986415883 5809864 10.31905782 5809864 13.14616498 5809864 1 0 1 0 1 "Markstein et al., 2004" 2 1 1 1 1 0 2 1 1 1 1 0 4 3 2 2 1 0 3L_5854919_5856342 3L 5854919 5856342 CG13287 CG13287 12 1.831765935 5855305 8.033190578 5855305 6.675832127 5855305 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_5970163_5970693 3L 5970163 5970693 CG32406 CG32406 468 1.491118077 5970273 3.517130621 5970273 5.616497829 5970273 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_6154333_6154619 3L 6154333 6154619 CG10274 CG10274 transcript overlap 2.4169279 6154441 4.117773019 6154441 5.564399421 6154441 1 0 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 2 1 1 0 0 0 3L_6282699_6283445 3L 6282699 6283445 CG32401 Or65a 11113 2.258098224 6282809 4 6283089 6.908827786 6283089 1 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_6740873_6741705 3L 6740873 6741705 CG32392 CG32392 3680 1.50261233 6741255 4.964668094 6741255 7.756874096 6741255 0 1 0 0 0 2 1 1 1 1 0 3 3 3 2 1 0 0 0 0 0 0 0 3L_6787574_6788108 3L 6787574 6788108 CG10037 vvl 23467 1.317659352 6787938 3.647751606 6787662 6.001447178 6787662 0 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 1 1 0 0 0 3L_6794649_6795759 3L 6794649 6795759 CG10037 vvl 30542 2.368861024 6795328 4.061027837 6795048 7.293777135 6795048 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 3L_6801621_6802138 3L 6801621 6802138 CG10037 vvl 37514 1.795193312 6801720 3.572805139 6801720 5.646888567 6801720 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 3L_6877793_6878312 3L 6877793 6878312 CG10078 Prat2 10493 1.83908046 6878144 3.611349036 6878144 9.434153401 6878144 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 3L_7107427_7108749 3L 7107427 7108749 CG8624 melt TSS overlap 3.141065831 7108019 5.56745182 7108283 11.63531114 7108474 1 0 0 0 0 3 2 1 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 3L_7111691_7112531 3L 7111691 7112531 CG8624 melt transcript overlap 2.306165099 7112361 3.798715203 7112361 5.881331404 7112361 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2 2 1 0 0 0 3L_7302488_7302958 3L 7302488 7302958 CG8602 CG8602 TSS overlap 1.743991641 7302730 2.91006424 7302730 5.617945007 7302730 0 1 0 0 0 1 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_7389897_7390148 3L 7389897 7390148 CR33948 pncr015:3L 9627 2.024033438 7390007 2.843683084 7390007 5.254703329 7390007 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_7493128_7493641 3L 7493128 7493641 CG32372 CG32372 TSS overlap 4.680250784 7493364 5.661670236 7493364 6.858176556 7493364 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 3L_7725882_7726447 3L 7725882 7726447 CG32373 CG32373 transcript overlap 0.951933124 7726011 3.51391863 7726011 5.740955137 7726011 0 1 0 0 0 2 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_7882679_7884680 3L 7882679 7884680 CG8114 pbl transcript overlap 4.535005225 7884476 9.405781585 7883349 9.344428365 7884214 1 0 0 0 0 6 6 4 4 3 2 5 4 4 3 3 2 1 1 1 0 0 0 3L_7961774_7962854 3L 7961774 7962854 CG7892 nmo transcript overlap 1.850574713 7962412 4.675588865 7962412 6.547033285 7962412 0 1 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 3L_8057831_8058340 3L 8057831 8058340 CG7565 CG7565 7400 1.111807732 8057941 3.149892934 8057941 5.098408104 8058170 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3L_8084140_8084551 3L 8084140 8084551 CG7927 CG7927 TSS overlap 2.402298851 8084268 3.953961456 8084268 6.413892909 8084268 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_8248171_8248449 3L 8248171 8248449 CG33274 CG33274 transcript overlap 1.641588297 8248279 1.86509636 8248279 5.11577424 8248279 0 1 0 0 0 1 0 0 0 0 0 2 2 2 1 0 0 0 0 0 0 0 0 3L_8430157_8430715 3L 8430157 8430715 CG6964 Gug transcript overlap 3.351097179 8430545 5.728051392 8430545 8.489146165 8430545 1 0 0 0 0 1 1 0 0 0 0 1 1 1 1 1 0 1 1 1 0 0 0 3L_8480641_8481472 3L 8480641 8481472 CG6694 CG6694 2222 1.908045977 8480748 5.497858672 8481023 7.752532562 8481023 0 1 0 0 0 4 1 1 0 0 0 3 2 1 1 0 0 3 0 0 0 0 0 3L_8626947_8628056 3L 8626947 8628056 CG6486 CG6486 3476 1.379310345 8627886 5.14882227 8627057 6.125904486 8627057 0 1 0 0 0 2 1 1 0 0 0 2 2 2 2 1 1 2 2 1 1 0 0 3L_8644120_8645432 3L 8644120 8645432 CG6494 h 4274 1.65830721 8645265 5.072805139 8644987 9.615050651 8644987 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3L_8649141_8650163 3L 8649141 8650163 CG6494 h TSS overlap 1.862068966 8649997 4.02248394 8649489 9.836468886 8649606 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_8803491_8804296 3L 8803491 8804296 CG4974 dally transcript overlap 1.632183908 8803601 4.622055675 8803601 6.946454414 8803601 0 1 0 0 0 1 1 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_8806639_8807425 3L 8806639 8807425 CG4974 dally transcript overlap 1.401253918 8806749 2.643468951 8807013 5.377713459 8807013 0 1 0 0 0 1 1 1 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 3L_8977410_8977946 3L 8977410 8977946 CG5093 Doc3 1199 1.770114943 8977520 9.295503212 8977520 15.65557164 8977520 0 1 0 0 1 "Stathopoulos et al., 2002 " 1 1 1 1 1 0 3 3 3 2 2 0 1 1 0 0 0 0 3L_8978566_8979328 3L 8978566 8979328 CG5093 Doc3 TSS overlap 1.908045977 8978899 7.082441113 8978899 8.740955137 8978899 0 1 0 0 1 "Stathopoulos et al., 2002 " 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_9002806_9003601 3L 9002806 9003601 CG5187 Doc2 8450 4.664576803 9003196 6.510706638 9003196 7.687409551 9003196 1 0 0 0 0 2 1 1 0 0 0 2 1 1 1 1 0 1 1 1 1 1 0 3L_9016068_9016617 3L 9016068 9016617 CG5133 Doc1 transcript overlap 1.392894462 9016449 2.442184154 9016175 5.830680174 9016449 0 1 0 0 1 "Stathopoulos et al., 2002 " 1 1 1 1 1 0 1 1 1 1 1 1 0 0 0 0 0 0 3L_9017443_9018000 3L 9017443 9018000 CG5133 Doc1 transcript overlap 1.187042842 9017830 4.36509636 9017830 7.450072359 9017830 0 1 0 0 1 "Stathopoulos et al., 2002 " 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3L_9395200_9395727 3L 9395200 9395727 CG3967 CG3967 transcript overlap 0.947753396 9395310 2.678800857 9395585 5.176555716 9395585 0 1 0 0 0 3 3 2 2 2 1 2 2 2 2 2 0 0 0 0 0 0 0 3L_9420741_9421763 3L 9420741 9421763 CG3529 CG3529 TSS overlap 2.225705329 9420824 3.675588865 9420925 5.727930535 9420925 1 0 0 0 0 3 1 1 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 3L_9435373_9436211 3L 9435373 9436211 CG32043 CG32043 transcript overlap 2.242424242 9435761 5.094218415 9435761 5.814761216 9436041 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_9465007_9465995 3L 9465007 9465995 CG32037 CG32037 transcript overlap 2.916405434 9465355 12.52997859 9465355 21.93198263 9465355 1 0 0 0 0 1 1 1 1 1 0 2 2 1 1 0 0 1 0 0 0 0 0 3L_9829348_9830547 3L 9829348 9830547 CG6721 Gap1 122 2.584117032 9829862 9.559957173 9829862 11.78147612 9830142 1 0 0 0 0 2 0 0 0 0 0 5 0 0 0 0 0 1 0 0 0 0 0 3L_10073769_10074279 3L 10073769 10074279 CG6640 CG6640 transcript overlap 1.320794148 10074149 2.917558887 10073879 5.696092619 10073879 0 1 0 0 0 3 3 3 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3L_10304486_10305303 3L 10304486 10305303 CR33586 mir-276b 10693 2.21107628 10304876 8.344753747 10304876 10.71490593 10304876 1 0 0 0 0 3 1 1 1 0 0 3 3 3 2 1 0 3 1 1 0 0 0 3L_10832368_10833307 3L 10832368 10833307 CG7958 tna transcript overlap 1.520703934 10832784 3.348783314 10832784 5.8 10832784 0 1 0 0 0 1 1 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 3L_10834064_10835403 3L 10834064 10835403 CG7958 tna transcript overlap 2.870600414 10834954 6.039397451 10834954 8.3 10834954 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 4 2 0 0 0 0 3L_11210792_11212639 3L 11210792 11212639 CG6185 CG6185 907 2.01552795 11211930 5.235225956 11211930 7.11 11212190 1 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 3L_11216774_11218453 3L 11216774 11218453 CG6185 CG6185 6889 3.105590062 11217513 4.697566628 11218005 5.85875 11217513 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 3L_11233952_11236115 3L 11233952 11236115 CG7590 scyl 7696 1.594202899 11235401 3.274623407 11235911 5.2475 11235911 0 1 0 0 0 6 3 1 0 0 0 5 4 3 0 0 0 1 0 0 0 0 0 3L_11528570_11528842 3L 11528570 11528842 CG11711 Mob1 transcript overlap 1.419254658 11528680 3.31170336 11528680 5.20625 11528680 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 3L_12479634_12480463 3L 12479634 12480463 CG10654 CG10654 1194 1.661490683 12479744 4.235225956 12480024 5.47 12480024 0 1 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_12539948_12540760 3L 12539948 12540760 CG10632 CG10632 transcript overlap 4.111801242 12540338 6.819235226 12540338 9.5425 12540338 1 0 0 0 0 3 2 2 2 2 2 2 2 2 2 2 2 3 2 1 0 0 0 3L_12651207_12651959 3L 12651207 12651959 CG10601 mirr 15736 2.014492754 12651522 4.943221321 12651522 5.50125 12651522 1 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 3L_13058156_13058964 3L 13058156 13058964 CG17300 CG17300 2272 2.800207039 13058546 5.855156431 13058546 6.10125 13058546 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_13093798_13094611 3L 13093798 13094611 CG11280 trn 5578 2.483436853 13094171 6.147161066 13094171 10.1 13094171 1 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3L_13189820_13190387 3L 13189820 13190387 CR32127 CR32127 1764 2.305383023 13189938 4.625724218 13189938 6.2475 13189938 1 0 0 0 0 3 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_13351992_13353308 3L 13351992 13353308 CG14112 CG14111 SNCF CG14111 TSS overlap 5.216356108 13352648 5.988412514 13352382 9.40875 13352382 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 3L_13828422_13829262 3L 13828422 13829262 CG8745 CG8745 transcript overlap 1.827122153 13828812 4.702201622 13828532 5.16875 13828532 0 1 0 0 0 4 2 1 1 1 0 5 4 2 2 2 0 2 2 1 0 0 0 3L_13889986_13890563 3L 13889986 13890563 CG8865 Rgl TSS overlap 1.980331263 13890084 4.792584009 13890084 7.33875 13890084 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 3L_14114971_14116048 3L 14114971 14116048 CG32139 Sox21b 18388 2.958592133 14115610 5.123986095 14115081 8.2225 14115081 1 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3L_14118710_14119528 3L 14118710 14119528 CG32139 Sox21b 22127 4.756728778 14119090 4.914252607 14119090 6.58125 14119090 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 2 2 2 1 0 3L_14156166_14156992 3L 14156166 14156992 CG33991 nuf transcript overlap 1.575569358 14156840 3.967555041 14156560 7.17625 14156560 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3L_14241220_14241981 3L 14241220 14241981 CG17697 fz transcript overlap 1.425465839 14241570 3.789107764 14241570 6.07375 14241570 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_14417643_14418725 3L 14417643 14418725 CG9598 CG9598 35052 1.729813665 14418050 7.389339513 14418050 10.38125 14418050 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3L_14419585_14420677 3L 14419585 14420677 CG9598 CG9598 36994 5.202898551 14420227 9.585168019 14420227 11.41375 14420227 1 0 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 4 2 2 2 2 0 3L_14608653_14609439 3L 14608653 14609439 CG32146 dlp transcript overlap 1.303312629 14609269 3.901506373 14609269 5.50375 14609269 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_14716252_14717337 3L 14716252 14717337 CG33261 Trl transcript overlap 3.406832298 14716905 10.51332561 14716641 15.29 14716641 1 0 0 0 0 4 4 2 2 1 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_14909109_14909938 3L 14909109 14909938 CG13465 CG13465 TSS overlap 3.785714286 14909499 3.304750869 14909499 5.4025 14909499 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_14911048_14911873 3L 14911048 14911873 CG12487 BobA TSS overlap 3.829192547 14911158 3.644264195 14911423 6.44 14911423 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 3L_14921462_14922298 3L 14921462 14922298 CG12487 BobA 10091 1.784679089 14922128 3.641946698 14921572 5.13375 14921572 0 1 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 3L_14932886_14935033 3L 14932886 14935033 CG5185 Tom TSS overlap 7.901656315 14933830 10.68366165 14933830 12.98125 14933556 1 0 0 0 0 2 2 2 2 1 1 2 1 1 0 0 0 4 1 1 0 0 0 3L_14937109_14939212 3L 14937109 14939212 CG3096 Brd TSS overlap 3.320910973 14938589 5.783314021 14938589 8.31375 14938589 1 0 0 0 0 3 2 2 2 1 0 3 3 2 2 1 0 2 1 0 0 0 0 3L_14940007_14941805 3L 14940007 14941805 CG3396 Ocho 107 6.228778468 14941411 5.60023175 14940315 7.52875 14940315 1 0 0 0 0 2 2 1 1 0 0 4 2 0 0 0 0 2 1 1 0 0 0 3L_15004570_15006144 3L 15004570 15006144 CG11551 ind 1685 4.055900621 15004949 6.790266512 15004949 9.25 15004949 1 0 1 0 1 "Weiss et al.,1998, unpublished" 1 1 1 1 1 0 1 0 0 0 0 0 1 1 1 1 0 0 3L_15128284_15129060 3L 15128284 15129060 CG7011 CG7011 TSS overlap 1.002070393 15128800 6.461181924 15128674 9.4975 15128674 0 1 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_15197953_15198786 3L 15197953 15198786 CG6890 Tollo 2114 2.170807453 15198339 4.916570104 15198339 8.265 15198339 1 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 3L_15199651_15201144 3L 15199651 15201144 CG6890 Tollo TSS overlap 1.552795031 15201071 6.884125145 15200527 7.68625 15200527 0 1 0 0 0 3 3 2 2 1 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_15227179_15228504 3L 15227179 15228504 CG6890 Tollo 26279 1.795031056 15227554 3.717265353 15227554 5.53125 15227554 0 1 0 0 0 1 1 0 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 3L_15528503_15529371 3L 15528503 15529371 CG7427 CG7427 TSS overlap 2.260869565 15528625 3.858632677 15528896 5.25625 15528896 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3L_15668436_15669550 3L 15668436 15669550 CG7554 comm2 3328 1.262939959 15669100 5.746234067 15668820 6.6725 15668820 0 1 0 0 0 2 0 0 0 0 0 4 3 3 0 0 0 0 0 0 0 0 0 3L_15767425_15767945 3L 15767425 15767945 CG6244 CG6244 5732 1.782608696 15767535 3.60023175 15767535 5.9075 15767535 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15770132_15770642 3L 15770132 15770642 CG6244 CG6244 3035 5.086956522 15770472 4.356894554 15770472 6.03125 15770472 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_15772289_15773094 3L 15772289 15773094 CG6244 CG6244 583 4.032091097 15772663 4.818076477 15772663 5.91875 15772663 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_15977816_15978672 3L 15977816 15978672 CG5841 mib1 745 0.989648033 15978198 3.806488992 15978198 7.13875 15978198 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15990128_15991700 3L 15990128 15991700 CG13076 Notum transcript overlap 2.099378882 15990790 4.812282735 15990790 9.23125 15990790 1 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3L_16269892_16270447 3L 16269892 16270447 CG13043 CG13043 678 1.781573499 16270002 2.996523754 16270002 5.11375 16270002 0 1 0 0 0 1 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 3L_16375479_16376479 3L 16375479 16376479 CG4609 fax transcript overlap 3.538302277 16376091 3.173812283 16375813 5.3275 16375813 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 3L_16440643_16441511 3L 16440643 16441511 CG33158 CG4531 argos transcript overlap 2.380952381 16440753 4.367323291 16441061 8.35125 16441061 1 0 0 0 0 3 2 2 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 3L_16454293_16455083 3L 16454293 16455083 CG33158 CG33158 transcript overlap 1.466873706 16454839 3.986095017 16454839 6.8075 16454839 0 1 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3L_16456050_16457152 3L 16456050 16457152 CG33158 CG33158 transcript overlap 1.738095238 16456702 4.901506373 16456702 8.74 16456702 0 1 0 0 0 2 2 2 2 1 1 3 2 2 2 0 0 0 0 0 0 0 0 3L_16975865_16976730 3L 16975865 16976730 CG6664 CG6664 4709 2.157349896 16976280 4.764774044 16976280 6.86 16976280 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_17380816_17382142 3L 17380816 17382142 CG3897 blot transcript overlap 1.802277433 17381050 5.10428737 17381050 9.125 17381050 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_17461179_17461979 3L 17461179 17461979 CG7571 Oatp74D transcript overlap 1.741200828 17461809 3.710312862 17461546 5.105 17461809 0 1 0 0 0 4 3 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_17615039_17615820 3L 17615039 17615820 CG32177 CG32179 CG32177 Krn transcript overlap 1.931677019 17615650 3.74391657 17615371 5.20625 17615371 0 1 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_17634228_17635065 3L 17634228 17635065 CR33683 snmRNA:641 239 4.188405797 17634601 4.41599073 17634601 6.34875 17634601 1 0 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 2 1 0 0 0 0 3L_17951428_17952211 3L 17951428 17952211 CG8127 Eip75B transcript overlap 7.841614907 17951787 3.219003476 17951787 5.64375 17951787 1 0 0 0 0 2 2 2 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3L_18404523_18405363 3L 18404523 18405363 CG13701 skl TSS overlap 2.008281573 18405053 3.59212051 18405053 6.5475 18405053 1 0 0 0 0 1 1 1 0 0 0 2 1 1 0 0 0 2 1 0 0 0 0 3L_18553572_18554689 3L 18553572 18554689 CG7271 CG7271 TSS overlap 2.751552795 18554241 4.119351101 18554103 6.62625 18554241 1 0 0 0 0 4 2 2 2 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3L_18558213_18559470 3L 18558213 18559470 CG4216 term TSS overlap 2.722567288 18558609 3.682502897 18558609 5.60375 18558609 1 0 0 0 0 6 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 3L_18584351_18585145 3L 18584351 18585145 CG4166 not transcript overlap 1.281573499 18584987 4.486674392 18584707 5.685 18584707 0 1 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_18998192_18999254 3L 18998192 18999254 CG11614 nkd transcript overlap 3.225672878 18998878 5.701042874 18998878 6.4425 18998878 1 0 0 0 0 1 1 1 1 1 0 3 3 2 1 1 1 0 0 0 0 0 0 3L_19023890_19024638 3L 19023890 19024638 CG3797 CG3797 3423 1.685300207 19024280 4.073001159 19024280 5.85375 19024280 0 1 0 0 0 4 3 1 1 1 0 4 4 2 2 1 0 2 1 0 0 0 0 3L_19048142_19048958 3L 19048142 19048958 CG14080 Mkp3 transcript overlap 4.031055901 19048532 7.502896871 19048532 10.86375 19048532 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 3L_19521696_19522811 3L 19521696 19522811 CG9300 CG9300 4015 1.891304348 19522324 6.126303592 19522061 6.96125 19522061 0 1 0 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3L_19525953_19526602 3L 19525953 19526602 CR33063 mir-9a 3797 1.34989648 19526432 4.800695249 19526432 6.3275 19526432 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_19527121_19528202 3L 19527121 19528202 CR33063 mir-9a 2197 3.775362319 19527752 16.202781 19527752 17.60375 19527752 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3L_19804650_19805668 3L 19804650 19805668 CG8287 Rab8 TSS overlap 1.757763975 19804864 3.556199305 19805219 5.44 19805219 0 1 0 0 0 4 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 3L_19831493_19833425 3L 19831493 19833425 CG8103 CG32217 Mi-2 Su(Tpl) transcript overlap 3.263975155 19831882 3.772885284 19831882 5.46375 19831882 1 0 0 0 0 4 1 1 1 0 0 4 2 2 1 0 0 2 0 0 0 0 0 3L_20334025_20334531 3L 20334025 20334531 CG5408 trbl transcript overlap 3.092132505 20334361 3.376593279 20334135 6.255 20334361 1 0 0 0 1 "Casal and Leptin, 1996 " 3 3 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_20336151_20337244 3L 20336151 20337244 CG5408 trbl 702 1.675983437 20336807 10.72885284 20336538 17.09 20336538 0 1 0 0 1 "Casal and Leptin, 1996 " 0 0 0 0 0 0 4 2 1 0 0 0 0 0 0 0 0 0 3L_20338381_20339810 3L 20338381 20339810 CG5408 trbl 2932 2.204968944 20339404 4.227114716 20339404 6.3075 20339404 1 0 0 0 1 "Casal and Leptin, 1996 " 4 2 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 3L_20450147_20451594 3L 20450147 20451594 CG5059 CG5059 transcript overlap 2.35610766 20451224 5.643105446 20451224 8.55625 20451224 1 0 0 0 0 3 1 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 3L_20627042_20628873 3L 20627042 20628873 CG4717 kni transcript overlap 2.363354037 20628187 4.31170336 20627907 7.01875 20628187 1 0 0 0 0 "Rothe et al., 1994" 4 2 2 0 0 0 1 1 1 0 0 0 4 1 0 0 0 0 3L_20633387_20634232 3L 20633387 20634232 CG4717 kni 4183 3.931677019 20633777 8.375434531 20633777 15.5325 20633777 1 0 0 0 0 "Rothe et al., 1994" 3 3 3 0 0 0 1 1 1 0 0 0 3 2 1 0 0 0 3L_20743232_20743774 3L 20743232 20743774 CG3680 CG3680 TSS overlap 2.504140787 20743445 3.548088065 20743445 5.2625 20743324 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_20944693_20945474 3L 20944693 20945474 CG9936 skd transcript overlap 1.297101449 20944792 2.845886443 20945072 5.3875 20945072 0 1 0 0 0 1 1 1 1 1 0 2 1 1 1 1 1 0 0 0 0 0 0 3L_21000150_21002134 3L 21000150 21002134 CG32434 siz transcript overlap 2.273291925 21001659 5.298957126 21001379 7.6825 21001379 1 0 0 0 0 3 3 2 0 0 0 5 3 3 0 0 0 9 1 1 0 0 0 3L_21079670_21080452 3L 21079670 21080452 CG10564 Ac78C transcript overlap 1.761904762 21079751 6.805330243 21080031 10.88375 21080031 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_21382791_21383624 3L 21382791 21383624 CG5081 Syx7 3128 1.604364326 21383180 3.549295775 21383180 6.462216625 21383180 0 1 0 0 0 2 2 2 1 1 0 0 0 0 0 0 0 5 2 1 1 1 1 3L_21413789_21414814 3L 21413789 21414814 CG5069 croc 3392 4.520872865 21414366 3.867203219 21414366 5.734256927 21414366 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 2 2 1 0 0 3L_21430849_21431769 3L 21430849 21431769 CG7199 Hr78 TSS overlap 1.967741935 21431381 7.958752515 21430973 10.58060453 21430973 0 1 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3L_22000182_22000993 3L 22000182 22000993 CG14561 CG14561 208 2.101518027 22000572 3.84305835 22000572 7.371536524 22000572 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_22066512_22067071 3L 22066512 22067071 CG12673 olf413 2886 0.885199241 22066622 9.898390342 22066622 18.36649874 22066622 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_22069204_22070221 3L 22069204 22070221 CG12673 olf413 TSS overlap 1.54459203 22069809 3.687122736 22069809 7.060453401 22069809 0 1 0 0 0 3 1 1 1 1 0 4 1 1 0 0 0 1 0 0 0 0 0 3L_22333862_22335259 3L 22333862 22335259 CG5723 Ten-m transcript overlap 2.15654649 22334532 8.273641851 22333972 10.91435768 22334252 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_22336263_22337863 3L 22336263 22337863 CG5723 Ten-m transcript overlap 2.617647059 22336894 22.76156942 22336894 22.97103275 22336894 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 3L_22341289_22341559 3L 22341289 22341559 CG5723 Ten-m transcript overlap 2.30455408 22341389 3.64889336 22341389 5.365239295 22341389 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_22521489_22522552 3L 22521489 22522552 CG14459 CG14459 3995 1.466793169 22522159 4.205231388 22522159 6.437027708 22522159 0 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3L_22651011_22651425 3L 22651011 22651425 CG6838 CG6838 TSS overlap 6.539848197 22651185 3.287726358 22651185 5.479848866 22651185 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_22716809_22717342 3L 22716809 22717342 CG32451 SPoCk transcript overlap 1.330170778 22716892 3.85915493 22716892 5.976070529 22716892 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_-165_1322 3R -165 1322 CG12581 CG12581 TSS overlap 1.537950664 614 4.884305835 55 8.518891688 334 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_137048_137901 3R 137048 137901 CG9791 CG9791 TSS overlap 1.685009488 137312 4.249496982 137451 6.468513854 137451 0 1 0 0 0 2 1 1 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3R_173772_174862 3R 173772 174862 CG9768 hkb 1400 1.79886148 174162 5.618712274 174162 9.426952141 174162 0 1 0 0 0 "Hader et al.,2000" 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 3R_297985_299030 3R 297985 299030 CG31523 CG31523 transcript overlap 3.319734345 298647 4.675050302 298647 7.042821159 298367 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 3R_485121_486140 3R 485121 486140 CG31531 CG31531 TSS overlap 2.722960152 485470 6.046277666 485470 10.82367758 485470 1 0 0 0 0 1 1 0 0 0 0 5 1 0 0 0 0 1 0 0 0 0 0 3R_671775_672589 3R 671775 672589 CG1133 opa 5946 1.190702087 672163 6.352112676 672163 11.09949622 672163 0 1 0 0 0 1 1 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 3R_673147_673632 3R 673147 673632 CG1133 opa 4903 1.572106262 673462 3.549295775 673257 5.090680101 673257 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_674741_675542 3R 674741 675542 CG1133 opa 2993 1.350094877 675097 3.692152918 674851 5.793450882 674851 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_677966_679248 3R 677966 679248 CG1133 opa TSS overlap 2.395635674 678616 3.995975855 678616 6.55163728 678616 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_679745_680348 3R 679745 680348 CG1133 opa transcript overlap 2.722960152 679969 4.69416499 679969 6.978589421 679969 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 4 3 3 2 0 0 3R_683739_684294 3R 683739 684294 CG1133 opa transcript overlap 2.338709677 683849 3.486921529 683849 7.136020151 683849 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_736099_737212 3R 736099 737212 CG31536 Cdep TSS overlap 2.079696395 736209 5.392354125 736841 10.87153652 736841 1 0 0 0 0 3 2 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3R_815525_816333 3R 815525 816333 CG2022 CG2022 1051 1.227703985 815896 5.857142857 816167 9.505037783 815896 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_864269_865309 3R 864269 865309 CG2530 corto 47099 2.038899431 864860 7.899396378 865139 12.2418136 865139 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_935176_936234 3R 935176 936234 CG12007 CG12007 17576 2.072106262 935797 6.565392354 935520 10.75314861 935520 1 0 0 0 0 3 1 1 1 0 0 3 3 2 2 0 0 2 0 0 0 0 0 3R_987022_987566 3R 987022 987566 CG12591 dpr16 transcript overlap 1.130929791 987132 6.559356137 987132 9.617128463 987132 0 1 0 0 0 4 3 0 0 0 0 3 2 2 0 0 0 1 0 0 0 0 0 3R_1037404_1038512 3R 1037404 1038512 CG2534 cno transcript overlap 3.028462998 1037794 6.498993964 1037794 11.08312343 1037794 1 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3 2 1 0 0 0 3R_1342581_1343409 3R 1342581 1343409 CG2902 Nmdar1 transcript overlap 2.934535104 1342959 4.856136821 1342959 8.088161209 1342959 1 0 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_1484650_1485254 3R 1484650 1485254 CG2182 CG2182 transcript overlap 1.806451613 1484821 2.636820926 1485099 6.013853904 1484821 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_1495970_1496772 3R 1495970 1496772 CG1347 CG1347 transcript overlap 1.673624288 1496060 5.745472837 1496340 10.38161209 1496340 0 1 0 0 0 2 1 1 1 1 0 3 2 0 0 0 0 0 0 0 0 0 0 3R_1510161_1511458 3R 1510161 1511458 CG2108 Rab23 TSS overlap 1.853889943 1511291 5.598591549 1510262 9.841309824 1510262 0 1 0 0 0 5 2 2 2 1 1 4 3 3 1 1 1 1 0 0 0 0 0 3R_1553443_1554357 3R 1553443 1554357 CG1239 CG1239 4906 2.564516129 1553832 6.804828974 1553832 10.56171285 1553832 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 6 1 1 0 0 0 3R_1562273_1562890 3R 1562273 1562890 CG1236 CG1236 TSS overlap 2.932637571 1562441 5.019114688 1562441 8.963476071 1562441 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_2104209_2104420 3R 2104209 2104420 CG1154 Osi12 TSS overlap 1.980075901 2104249 2.564386318 2104249 5.173803526 2104249 0 1 0 0 0 2 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3R_2253616_2254160 3R 2253616 2254160 CG10272 gpp transcript overlap 2.288425047 2253726 4.47082495 2253726 6.071788413 2253726 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_2565178_2566035 3R 2565178 2566035 CG31481 pb transcript overlap 1.496204934 2565567 3.834004024 2565567 7.852644836 2565567 0 1 0 0 0 3 2 2 2 2 2 2 1 1 1 1 1 2 1 0 0 0 0 3R_2577181_2578190 3R 2577181 2578190 CG1046 zen 1731 1.741935484 2577291 5.391348089 2577291 5.647355164 2577291 0 1 0 0 1 "Doyle et al., 1989; Jiang et al., 1991" 2 2 2 0 0 0 2 2 2 2 1 0 2 1 1 0 0 0 3R_2579787_2581714 3R 2579787 2581714 CG1046 zen TSS overlap 2.658444023 2581323 5.487927565 2581323 10.0465995 2580251 1 0 1 0 1 "Doyle et al., 1989; Jiang et al., 1991" 4 2 2 2 2 2 2 2 2 2 2 1 4 3 2 2 2 1 3R_2586618_2589105 3R 2586618 2589105 CG2198 Ama TSS overlap 1.887096774 2587998 4.812877264 2587254 7.710327456 2588278 0 1 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 2 1 1 1 1 1 3R_2689422_2690469 3R 2689422 2690469 CG2047 ftz TSS overlap 2.481973435 2690300 3.567404427 2689811 5.64861461 2689811 1 0 0 0 0 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3R_2691263_2692029 3R 2691263 2692029 CG2047 ftz 1217 2.39943074 2691863 5.912474849 2691607 9.153652393 2691607 1 0 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 3R_2714300_2714825 3R 2714300 2714825 CG2047 ftz 24254 1.712523719 2714655 3.347082495 2714655 6.5 2714655 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_2718739_2719479 3R 2718739 2719479 CG2047 ftz 28693 1.780834915 2719041 4.663983903 2719041 6.071788413 2719041 0 1 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_2742247_2743075 3R 2742247 2743075 CG1028 Antp transcript overlap 2.221062619 2742632 5.220321932 2742632 9.889168766 2742632 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3R_2774633_2775201 3R 2774633 2775201 CG1028 Antp transcript overlap 1.172675522 2774743 3.412474849 2775022 5.379093199 2775022 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_2819923_2821134 3R 2819923 2821134 CG1028 Antp transcript overlap 3.123339658 2820885 7.047283702 2820604 14.01511335 2820604 1 0 0 0 0 2 1 1 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3R_2832380_2833209 3R 2832380 2833209 CG1028 Antp 7430 1.992409867 2832760 3.42555332 2832760 6.700251889 2832760 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 3R_2931113_2932162 3R 2931113 2932162 CG1070 Alh transcript overlap 1.344402277 2931473 5.609657948 2931752 10.45214106 2931752 0 1 0 0 0 2 2 2 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3R_2936965_2937990 3R 2936965 2937990 CG1070 Alh transcript overlap 1.632827324 2937570 5.004024145 2937570 7.25440806 2937570 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_2987942_2988755 3R 2987942 2988755 CG2507 sas TSS overlap 1.740037951 2988476 4.826961771 2988476 6.76070529 2988476 0 1 0 0 0 3 2 2 2 1 0 2 2 2 2 1 0 0 0 0 0 0 0 3R_3737026_3737627 3R 3737026 3737627 CG2867 Prat TSS overlap 1.416508539 3737416 3.055331992 3737136 5.818639798 3737136 0 1 0 0 0 3 3 3 1 1 0 3 2 1 1 1 1 0 0 0 0 0 0 3R_3939141_3939926 3R 3939141 3939926 CG7850 puc transcript overlap 1.74288425 3939493 4.173038229 3939493 5.863979849 3939493 0 1 0 0 0 2 1 1 1 0 0 2 1 1 1 1 0 1 1 1 1 1 0 3R_3942101_3942380 3R 3942101 3942380 CG7850 puc transcript overlap 1.590132827 3942211 2.489939638 3942211 5.042821159 3942211 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_3976922_3977199 3R 3976922 3977199 CG9656 grn transcript overlap 2.347248577 3977029 3.783702213 3977029 5.98488665 3977029 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4162208_4162757 3R 4162208 4162757 CG9603 CG9603 4006 2.15085389 4162587 4.309859155 4162587 5.056675063 4162587 1 0 0 0 0 2 2 2 1 1 0 2 2 2 0 0 0 1 0 0 0 0 0 3R_4524571_4525394 3R 4524571 4525394 CG9786 hb 1031 1.124288425 4524681 2.105633803 4524950 5.217884131 4524950 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4526517_4527310 3R 4526517 4527310 CG8112 CG8112 TSS overlap 1.629981025 4526739 3.393360161 4526879 6.356423174 4526879 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_4633622_4634930 3R 4633622 4634930 CG9837 CG9837 603 3.183111954 4634008 5.674044266 4634008 7.811083123 4634458 1 0 0 0 0 3 1 1 1 0 0 2 1 0 0 0 0 3 0 0 0 0 0 3R_4667547_4668085 3R 4667547 4668085 CG31349 pyd transcript overlap 3.269449715 4667665 7.23943662 4667665 11.80982368 4667665 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_4682860_4684183 3R 4682860 4684183 CG31349 pyd transcript overlap 2.111005693 4683746 3.45472837 4683746 5.585642317 4683746 1 0 0 0 0 3 2 2 2 2 2 3 1 0 0 0 0 0 0 0 0 0 0 3R_4801472_4802274 3R 4801472 4802274 CG11967 CG11967 4369 1.90512334 4802104 3.400402414 4802104 5.981108312 4802104 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_4847408_4849288 3R 4847408 4849288 CG11988 neur transcript overlap 3.892789374 4848281 3.393360161 4847770 6.273299748 4847770 1 0 0 0 0 4 3 2 0 0 0 4 4 4 4 2 2 0 0 0 0 0 0 3R_4849848_4851522 3R 4849848 4851522 CG11988 neur transcript overlap 3.60341556 4849958 4.988933602 4850797 8.070528967 4850797 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_4855544_4856298 3R 4855544 4856298 CG11988 neur transcript overlap 2.989563567 4855912 2.552313883 4855912 5.24559194 4855912 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_4863101_4864713 3R 4863101 4864713 CG11988 neur transcript overlap 3.960151803 4863728 10.9305835 4863728 15.49874055 4863728 1 0 0 0 0 6 3 2 1 1 0 5 4 3 2 2 0 0 0 0 0 0 0 3R_5084149_5084348 3R 5084149 5084348 CG9740 CG9740 TSS overlap 1.295066414 5084188 6.331991952 5084188 7.838790932 5084188 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_5226886_5227453 3R 5226886 5227453 CG9354 CG8132 RpL34b CG8132 TSS overlap 1.753320683 5227016 3.3138833 5227149 6.167506297 5227149 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_5328885_5329680 3R 5328885 5329680 CG9366 RhoL 586 1.112903226 5329230 5.112676056 5329230 5.934508816 5329230 0 1 0 0 1 "Casal and Leptin, 1996; Stathopoulos et al., 2002 " 3 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_5416677_5417844 3R 5416677 5417844 CG9424 CG8312 bocksbeutel CG8312 TSS overlap 1.951612903 5416714 14.37122736 5417135 22.58186398 5417135 0 1 0 0 0 3 2 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3R_5420989_5421542 3R 5420989 5421542 CG8312 CG8312 transcript overlap 3.299810247 5421372 3.754527163 5421372 5.799748111 5421372 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_5500030_5501423 3R 5500030 5501423 CG8358 CG8358 TSS overlap 1.116698292 5500680 25.69014085 5500680 36.83753149 5500680 0 1 0 0 0 8 1 1 1 0 0 8 0 0 0 0 0 1 0 0 0 0 0 3R_5699426_5700721 3R 5699426 5700721 CG12418 CG12418 142 3.631878558 5700069 8.911468813 5700069 13.74685139 5700069 1 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_5705308_5706141 3R 5705308 5706141 CG12802 CG12802 3911 1.828273245 5705698 4.989939638 5705698 7.070528967 5705698 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_5712236_5712706 3R 5712236 5712706 CG12802 CG12802 10839 1.527514231 5712536 6.150905433 5712336 10.07808564 5712336 0 1 0 0 0 1 1 1 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 3R_5928890_5929293 3R 5928890 5929293 CG6203 Fmr1 transcript overlap 1.421252372 5928917 3.621730382 5928917 5.909319899 5928917 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_5969673_5970410 3R 5969673 5970410 CG6241 CG6241 TSS overlap 2.296963947 5970170 5.516096579 5969962 8.273299748 5969962 1 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3R_5990697_5991230 3R 5990697 5991230 CG6264 Best1 transcript overlap 1.35199241 5990807 2.814889336 5990807 5.395465995 5990807 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_6048226_6048774 3R 6048226 6048774 CG12420 CG12420 TSS overlap 1.657495256 6048324 3.122736419 6048324 5.0302267 6048324 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_6425355_6426322 3R 6425355 6426322 CG17117 hth transcript overlap 3.196394687 6425890 4.14084507 6425890 6.943324937 6425890 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 3R_6439800_6440941 3R 6439800 6440941 CG17117 hth transcript overlap 2.443074004 6440207 5.488933602 6440207 12.25692695 6440207 1 0 0 0 0 0 0 0 0 0 0 3 2 2 2 2 1 0 0 0 0 0 0 3R_6442333_6443741 3R 6442333 6443741 CG17117 hth transcript overlap 1.944971537 6442439 4.65694165 6442936 5.617128463 6442936 0 1 0 0 0 0 0 0 0 0 0 3 2 1 1 1 1 0 0 0 0 0 0 3R_6484139_6485212 3R 6484139 6485212 CG6465 CG6465 17680 1.323529412 6484798 5.052313883 6484249 6.647355164 6484249 0 1 0 0 0 4 3 1 1 1 1 7 5 5 4 3 2 1 0 0 0 0 0 3R_6722113_6722572 3R 6722113 6722572 CG6621 CG6621 2861 1.151802657 6722404 4.269617706 6722404 7.118387909 6722404 0 1 0 0 0 5 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_7060551_7061432 3R 7060551 7061432 CG17184 CG17721 CG17184 CG17721 TSS overlap 3.996204934 7060731 5.427565392 7060871 9.550377834 7060871 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_7204035_7204856 3R 7204035 7204856 CG17228 pros transcript overlap 2.880455408 7204425 8.188128773 7204425 12.43198992 7204425 1 0 0 0 0 1 1 1 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_7215099_7215924 3R 7215099 7215924 CG17228 pros transcript overlap 1.720113852 7215490 3.944668008 7215490 8.229219144 7215490 0 1 0 0 0 1 1 0 0 0 0 5 4 3 2 1 0 0 0 0 0 0 0 3R_7256995_7257831 3R 7256995 7257831 CG5276 CG6764 CG5276 CG6764 TSS overlap 16.38614801 7257385 6.82193159 7257385 17.08312343 7257385 1 0 0 0 0 1 0 0 0 0 0 4 2 2 2 0 0 1 0 0 0 0 0 3R_7600996_7602638 3R 7600996 7602638 CG31364 l(3)neo38 2188 2.971537002 7602170 5.642857143 7601087 9.269521411 7601087 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_7638388_7638914 3R 7638388 7638914 CG31116 CG31116 6105 1.314041746 7638485 3.197183099 7638485 5.444584383 7638485 0 1 0 0 0 3 3 3 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_7702729_7703467 3R 7702729 7703467 CG14728 sad TSS overlap 1.5 7702952 6.122736419 7702952 10.16624685 7702952 0 1 0 0 0 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_7949314_7949863 3R 7949314 7949863 CG4702 CG4702 transcript overlap 1.878557875 7949695 3.135814889 7949415 5.153652393 7949415 0 1 0 0 0 3 3 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 3R_8077290_8078916 3R 8077290 8078916 CG3942 CG3942 993 1.499051233 8077674 5.791750503 8078466 9.304785894 8078466 0 1 0 0 0 3 2 2 0 0 0 3 2 2 0 0 0 2 0 0 0 0 0 3R_8208036_8208821 3R 8208036 8208821 CG10035 CG10035 TSS overlap 1.552182163 8208116 3.226358149 8208658 6.05163728 8208518 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8256336_8257203 3R 8256336 8257203 CG5266 Pros25 TSS overlap 4.122390892 8256673 7.802816901 8256673 13.15365239 8256673 1 0 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 3R_8467255_8467528 3R 8467255 8467528 CG6753 CG6753 transcript overlap 0.882352941 8467365 3.031187123 8467365 5.010075567 8467365 0 1 0 0 0 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8580256_8580816 3R 8580256 8580816 CG14390 beat-Vc TSS overlap 2.517077799 8580646 3.012072435 8580646 5.079345088 8580646 1 0 0 0 0 2 2 2 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3R_8811650_8812280 3R 8811650 8812280 CG31342 CG31342 TSS overlap 3.360040568 8811830 5.564345992 8811830 7.42875 8811830 1 0 0 0 0 3 2 1 1 1 1 2 1 0 0 0 0 1 0 0 0 0 0 3R_8895104_8898505 3R 8895104 8898505 CG7771 sim transcript overlap 5.260649087 8896153 17.13607595 8895879 18.3575 8895879 1 0 1 0 1 "Kasai et al., 1992, Kasai et al., 1998; Markstein et al., 2004" 4 2 2 2 2 1 5 5 5 4 3 2 6 2 1 1 0 0 3R_9118697_9120519 3R 9118697 9120519 CG8458 wntD TSS overlap 5.836713996 9119078 24.19620253 9119078 35.4475 9119078 1 0 0 1 1 "Gordon et al., 2005" 1 0 0 0 0 0 3 3 3 2 2 2 3 2 2 1 0 0 3R_9454095_9454931 3R 9454095 9454931 CG10841 CG10841 2733 1.572008114 9454204 3.900843882 9454481 5.99125 9454481 0 1 0 0 0 2 2 2 1 0 0 3 3 3 2 0 0 0 0 0 0 0 0 3R_9540497_9541943 3R 9540497 9541943 CG34044 CG34044 571 4.10040568 9540887 7.21835443 9541722 9.75375 9541722 1 0 0 0 0 3 3 3 3 1 1 0 0 0 0 0 0 4 4 2 1 0 0 3R_9544795_9545367 3R 9544795 9545367 CG9602 CG9602 907 1.882352941 9544902 6.943037975 9544902 5.91625 9544902 0 1 0 0 0 2 2 2 2 2 0 2 2 2 2 2 0 0 0 0 0 0 0 3R_9705141_9705664 3R 9705141 9705664 CG9930 E5 5240 1.652129817 9705228 3.879746835 9705228 5.15 9705228 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 3R_9725409_9725851 3R 9725409 9725851 CG2988 ems 1730 1.246450304 9725720 4.377637131 9725720 6.3625 9725720 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_9735145_9735985 3R 9735145 9735985 CG2988 ems 7564 1.497971602 9735535 3.401898734 9735535 5.33875 9735535 0 1 0 0 0 0 0 0 0 0 0 2 2 2 2 2 2 0 0 0 0 0 0 3R_9814450_9814985 3R 9814450 9814985 CG9924 CG9924 transcript overlap 1.526369168 9814559 4.435654008 9814824 7.6275 9814824 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_10287624_10288383 3R 10287624 10288383 CG31330 CG31330 28722 2.148073022 10288248 4.301687764 10287968 9.0475 10287968 1 0 0 0 0 5 4 2 2 0 0 2 2 1 1 1 0 0 0 0 0 0 0 3R_10396069_10396881 3R 10396069 10396881 CG8050 Cys 706 1.535496957 10396711 6.137130802 10396711 11.12125 10396711 0 1 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_10412302_10413370 3R 10412302 10413370 CG31317 stumps 4815 1.773833671 10413204 6.006329114 10412924 7.11375 10412924 0 1 0 0 1 "Casal and Leptin, 1996, unpublished" 0 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 3R_10504881_10506240 3R 10504881 10506240 CG7649 Neu3 transcript overlap 4.520283976 10505551 13.907173 10505551 16.14125 10505551 1 0 0 0 1 "Stathopoulos et al., 2002 " 2 2 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_10643285_10644393 3R 10643285 10644393 CG33555 btsz transcript overlap 2.975659229 10643931 14.67405063 10643931 16.42625 10643931 1 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3R_10679446_10680058 3R 10679446 10680058 CG33555 btsz TSS overlap 1.868154158 10679626 3.969409283 10679626 6.19125 10679626 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_11465489_11466251 3R 11465489 11466251 CG5302 CG5302 6884 1.014198783 11465599 4.175105485 11465867 5.0125 11465867 0 1 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_11854020_11855407 3R 11854020 11855407 CG3978 pnr transcript overlap 1.27484787 11854688 7.05907173 11854688 10.315 11854688 0 1 0 1 1 "Winick et al., 1993" 1 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_11859695_11860268 3R 11859695 11860268 CG3978 pnr transcript overlap 1.61663286 11860072 3.308016878 11860072 7.37375 11860072 0 1 0 0 1 "Winick et al., 1993" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12100141_12100882 3R 12100141 12100882 CG6963 gish transcript overlap 1.618661258 12100712 3.814345992 12100506 7.49875 12100506 0 1 0 0 0 1 1 1 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3R_12377405_12378366 3R 12377405 12378366 CG14888 CG14888 1646 1.944219067 12377683 5.110759494 12377683 7.32125 12377683 0 1 0 0 0 4 4 4 3 2 1 0 0 0 0 0 0 1 0 0 0 0 0 3R_12456296_12457091 3R 12456296 12457091 CG6588 Fas1 transcript overlap 1.304259635 12456924 3.892405063 12456680 5.41875 12456680 0 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12545317_12546139 3R 12545317 12546139 CG10388 Ubx transcript overlap 1.359026369 12545427 4.561181435 12545966 7.48 12545966 0 1 0 0 0 3 2 1 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_12598586_12599426 3R 12598586 12599426 CR31273 bxd TSS overlap 1.558823529 12599256 6.489451477 12599256 8.325 12599256 0 1 0 0 0 1 1 1 1 0 0 2 2 2 1 1 0 1 0 0 0 0 0 3R_12651654_12652410 3R 12651654 12652410 CG10325 abd-A transcript overlap 1.297160243 12652259 2.97257384 12652044 6.905 12652044 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 3R_13219990_13220715 3R 13219990 13220715 CG5413 CREG TSS overlap 1.656186613 13220170 4.539029536 13220300 5.57125 13220170 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_13430240_13431277 3R 13430240 13431277 CG7623 sll 547 14.74543611 13430875 4.273206751 13430595 5.21375 13430595 1 0 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 3R_13651437_13652519 3R 13651437 13652519 CG31246 CG31246 transcript overlap 1.588235294 13652107 4.729957806 13652107 7.8325 13652107 0 1 0 0 0 3 2 2 2 2 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_13906490_13908163 3R 13906490 13908163 CG14317 CG14317 TSS overlap 2.789046653 13907158 7.232067511 13907158 7.94 13907158 1 0 0 0 0 4 3 2 1 0 0 4 4 3 1 1 0 0 0 0 0 0 0 3R_14489025_14489235 3R 14489025 14489235 CG7698 CG7698 transcript overlap 1.560851927 14489135 3.157172996 14489135 7.64875 14489135 0 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_14812884_14814118 3R 14812884 14814118 CG31043 gukh transcript overlap 3.807302231 14813390 15.00949367 14813668 18.1025 14813668 1 0 0 0 0 4 4 0 0 0 0 4 3 0 0 0 0 1 0 0 0 0 0 3R_14815637_14817461 3R 14815637 14817461 CG31043 gukh transcript overlap 5.045638945 14815966 11.10759494 14815966 18.6675 14815966 1 0 0 0 0 3 3 1 0 0 0 1 1 0 0 0 0 3 0 0 0 0 0 3R_15155533_15156312 3R 15155533 15156312 CG3619 Dl 3598 1.831643002 15155643 6.760548523 15155862 7.8525 15155862 0 1 0 0 0 3 2 2 1 0 0 2 1 1 1 0 0 0 0 0 0 0 0 3R_15164424_15165483 3R 15164424 15165483 CG3619 Dl 12489 2.011156187 15164827 4.683544304 15164827 7.66 15164827 1 0 0 0 0 1 1 0 0 0 0 3 2 1 0 0 0 1 1 1 1 0 0 3R_15166283_15168070 3R 15166283 15168070 CG3619 Dl 14348 3.319472617 15167620 14.00949367 15167620 19.34625 15167620 1 0 0 0 0 3 2 2 2 2 0 2 2 2 1 1 0 2 2 0 0 0 0 3R_15170820_15172829 3R 15170820 15172829 CG3619 Dl 18885 1.516227181 15170930 5.386075949 15170930 9.0825 15170930 0 1 0 0 0 5 3 2 0 0 0 6 6 4 2 2 0 1 0 0 0 0 0 3R_15175796_15176900 3R 15175796 15176900 CG3581 CG3581 23571 4.708924949 15176218 28.87763713 15176218 27.0875 15176218 1 0 0 0 0 0 0 0 0 0 0 3 2 2 2 2 1 2 1 0 0 0 0 3R_15756297_15757578 3R 15756297 15757578 CG4451 Hs6st transcript overlap 7.867139959 15756920 15.00527426 15756920 20.24 15756920 1 0 0 0 0 1 1 0 0 0 0 2 1 1 0 0 0 3 3 1 0 0 0 3R_15760265_15761892 3R 15760265 15761892 CG4451 Hs6st transcript overlap 5.710953347 15760787 8.0907173 15760787 12.305 15760787 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 3R_16117563_16118996 3R 16117563 16118996 CG5067 cic TSS overlap 1.637931034 16117946 6.676160338 16117946 9.07 16117946 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 3R_16368496_16369600 3R 16368496 16369600 CG4257 Stat92E transcript overlap 2.801217039 16369161 7.081223629 16369161 7.78625 16369161 1 0 0 0 0 2 2 2 1 1 0 1 1 1 1 1 0 1 0 0 0 0 0 3R_16375977_16376973 3R 16375977 16376973 CG4257 Stat92E transcript overlap 2.698782961 16376766 7.601265823 16376247 10.845 16376247 1 0 0 0 0 2 1 0 0 0 0 5 5 1 1 0 0 0 0 0 0 0 0 3R_16399276_16400886 3R 16399276 16400886 CG5412 CG5412 1844 2.922920892 16399386 3.516877637 16399386 5.26375 16399386 1 0 0 0 0 0 0 0 0 0 0 3 2 2 1 1 0 3 0 0 0 0 0 3R_16926666_16928066 3R 16926666 16928066 CG7044 CG5745 CG7044 CG5745 TSS overlap 2.598377282 16927525 3.946202532 16927525 6.81375 16927525 1 0 0 0 0 4 1 1 0 0 0 3 3 2 1 1 0 1 0 0 0 0 0 3R_17024741_17024875 3R 17024741 17024875 CG17299 SNF4Agamma transcript overlap 1.163286004 17024778 2.237341772 17024778 5.3425 17024778 0 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_17284012_17284852 3R 17284012 17284852 CG6545 lbe 11970 1.361054767 17284402 5.042194093 17284402 7.0225 17284402 0 1 0 0 0 1 1 1 1 1 1 2 2 2 2 2 1 1 0 0 0 0 0 3R_17360707_17360987 3R 17360707 17360987 CG15499 CG15499 2818 1.210953347 17360817 4.791139241 17360817 5.5625 17360817 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17441707_17442420 3R 17441707 17442420 CR32929 mir-11 5826 2.745436105 17442103 8.493670886 17442103 10.6075 17442103 1 0 0 0 0 2 2 2 2 0 0 4 3 2 1 0 0 0 0 0 0 0 0 3R_17492669_17493206 3R 17492669 17493206 CG6349 DNApol-alpha180 transcript overlap 1.661257606 17493036 4.467299578 17493036 5.62 17493036 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_17584520_17584859 3R 17584520 17584859 CG31177 CG31177 transcript overlap 1.120689655 17584700 3.103375527 17584700 5.27125 17584700 0 1 0 0 0 3 3 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_17870137_17870676 3R 17870137 17870676 CG10293 how transcript overlap 3.079107505 17870507 5.511603376 17870507 3.37125 17870507 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_18868739_18869017 3R 18868739 18869017 CG13837 CG13837 695 1.312373225 18868847 2.726793249 18868847 5.26125 18868847 0 1 0 0 0 1 1 1 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_18957147_18957694 3R 18957147 18957694 CG4637 hh transcript overlap 2.096348884 18957245 8.003164557 18957245 9.1 18957245 1 0 0 0 0 2 1 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 3R_19018827_19019617 3R 19018827 19019617 CG17894 cnc transcript overlap 2.45841785 19019204 12.46518987 19019204 14.1525 19019204 1 0 0 0 0 0 0 0 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 3R_19021189_19022009 3R 19021189 19022009 CG17894 cnc transcript overlap 1.385395538 19021540 5.506329114 19021540 7.505 19021540 0 1 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_19077463_19078194 3R 19077463 19078194 CG6755 EloA transcript overlap 1.653144016 19077518 3.310126582 19078024 5.74125 19078024 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_19104489_19105228 3R 19104489 19105228 CG10868 orb transcript overlap 1.931987248 19104778 2.734870317 19104778 5.265232975 19104778 0 1 0 0 0 0 0 0 0 0 0 2 2 2 2 2 2 1 1 1 1 1 1 3R_19124440_19127283 3R 19124440 19127283 CG17077 pnt transcript overlap 1.939426142 19126273 9.065321806 19126043 12.78733572 19126043 0 1 0 0 0 6 4 4 2 2 0 7 5 3 3 2 0 2 1 0 0 0 0 3R_19169083_19170192 3R 19169083 19170192 CG17077 pnt transcript overlap 2.81402763 19169479 7.872238232 19169479 9.186379928 19169479 1 0 0 0 0 2 1 1 1 0 0 3 3 3 2 1 0 1 0 0 0 0 0 3R_19172275_19173633 3R 19172275 19173633 CG6768 DNApol-epsilon 280 2.972369819 19173451 6.821325648 19173451 7.864994026 19172921 1 0 0 0 0 0 0 0 0 0 0 3 3 3 2 1 0 1 0 0 0 0 0 3R_19584168_19584693 3R 19584168 19584693 CG10371 Plip transcript overlap 1.102019129 19584523 2.694524496 19584383 5.093189964 19584383 0 1 0 0 0 2 1 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_19607930_19608964 3R 19607930 19608964 CG10379 mbc transcript overlap 1.781083953 19608308 5.878001921 19608308 5.857825568 19608308 0 1 0 0 0 2 1 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_19712130_19712969 3R 19712130 19712969 CG5212 Pli transcript overlap 2.244420829 19712800 6.297790586 19712520 8.33572282 19712520 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_19742964_19743953 3R 19742964 19743953 CG13598 sba transcript overlap 2.074388948 19743537 2.994236311 19743809 5.154121864 19743537 1 0 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 1 1 0 0 0 0 3R_20123036_20123872 3R 20123036 20123872 CG6383 crb transcript overlap 5.148777896 20123426 6.314121037 20123426 9.524492234 20123426 1 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 2 2 0 0 0 0 3R_20455646_20456228 3R 20455646 20456228 CG6668 atl transcript overlap 2.533475027 20455919 3.903938521 20455919 5.749103943 20455919 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_20574726_20575587 3R 20574726 20575587 CG6868 tld TSS overlap 2.413390011 20575112 4.362151777 20575112 9.102747909 20575112 1 0 1 0 1 "Kirov et al., 1994" 1 1 1 1 1 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_20997965_20999868 3R 20997965 20999868 CG13661 CG13661 TSS overlap 1.544102019 20999698 4.131604227 20998624 6.927120669 20998624 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_21487117_21488180 3R 21487117 21488180 CG5053 CG5053 TSS overlap 1.759829968 21487346 5.261287224 21487450 6.555555556 21487590 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2 1 1 1 1 0 3R_21835665_21836994 3R 21835665 21836994 CG8337 malpha TSS overlap 5.167906482 21836308 15.05379443 21836308 14.72640382 21836554 1 0 0 0 0 2 2 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 3R_21849908_21851022 3R 21849908 21851022 CG6099 m4 TSS overlap 5.173219979 21850298 11.73583093 21850578 16.40740741 21850578 1 0 0 0 0 2 2 2 2 2 1 2 1 1 1 1 1 2 1 0 0 0 0 3R_21852499_21854111 3R 21852499 21854111 CG6096 HLHm5 1346 5.21466525 21852844 13.25840538 21852844 16.27001195 21852844 1 0 0 0 0 2 2 2 2 2 1 4 4 4 4 4 2 1 1 1 1 1 0 3R_21861181_21862991 3R 21861181 21862991 CG8365 E(spl) TSS overlap 5.516471838 21862064 15.61767531 21862064 16.41696535 21862064 1 0 1 0 1 0 8 6 5 5 3 2 3 2 2 2 2 1 6 4 1 1 1 1 3R_21865619_21866301 3R 21865619 21866301 CG8365 E(spl) TSS overlap 1.925611052 21866069 3.494716619 21866131 5.605734767 21866131 0 1 0 0 1 unpublished 1 1 1 1 1 1 2 2 2 2 2 2 0 0 0 0 0 0 3R_21877881_21878719 3R 21877881 21878719 CG14542 CG6095 CG14542 CG6095 TSS overlap 3.060573858 21878413 3.292026897 21878271 5.338112306 21878271 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_22917123_22917400 3R 22917123 22917400 CG15884 CG15884 278 1.191285866 22917233 5.314121037 22917233 5.350059737 22917233 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_23078581_23079176 3R 23078581 23079176 CG5930 TfIIA-L transcript overlap 1.581296493 23078808 3.670509126 23078808 5.151732378 23078808 0 1 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_23270862_23271421 3R 23270862 23271421 CG13978 CG13978 18490 1.726886291 23271252 5.711815562 23271252 7.971326165 23271252 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 3R_24351589_24352148 3R 24351589 24352148 CG33103 Ppn transcript overlap 1.284803401 24351699 4.337175793 24351699 5.3130227 24351699 0 1 0 0 0 1 1 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 3R_24411900_24412445 3R 24411900 24412445 CG10002 fkh 1095 2.360255048 24412280 3.444764649 24412280 5.063321386 24412001 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 3R_24457342_24457859 3R 24457342 24457859 CG10011 CG10011 transcript overlap 1.712008502 24457452 3.352545629 24457452 5.231780167 24457452 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_24864919_24866151 3R 24864919 24866151 CG1954 Pkc98E transcript overlap 2.617428268 24864959 3.761767531 24865499 5.295101553 24865499 1 0 0 0 0 2 0 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 3R_24912390_24913996 3R 24912390 24913996 CG11873 CG11873 8713 1.888416578 24912773 2.830931796 24912773 5.04181601 24913546 0 1 0 0 0 3 1 1 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3R_24972381_24972941 3R 24972381 24972941 CG14511 CG14511 TSS overlap 1.221041445 24972631 3.035542747 24972491 5.17921147 24972631 0 1 0 0 0 1 1 1 1 0 0 2 2 2 1 0 0 0 0 0 0 0 0 3R_25123112_25123945 3R 25123112 25123945 CG14506 CG14506 161 1.773645058 25123500 8.199807877 25123500 13.08482676 25123500 0 1 0 0 0 3 3 2 1 0 0 1 1 1 0 0 0 2 1 0 0 0 0 3R_25129411_25130489 3R 25129411 25130489 CG14506 CG14506 6460 1.210414453 25130043 4.892411143 25130043 5.743130227 25130043 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 4 4 3 1 0 0 3R_25132592_25135295 3R 25132592 25135295 CG14506 CG14506 9641 3.810839532 25134594 8.472622478 25134594 10.34767025 25132702 1 0 0 0 0 2 2 2 1 0 0 7 7 7 4 0 0 0 0 0 0 0 0 3R_25373440_25374228 3R 25373440 25374228 CG1897 Dr 7881 1.546227418 25374065 6.063400576 25374065 8.585424134 25374065 0 1 0 0 1 "d'Alessio and Frasch, 1996; von Ohlen and Doe, 2000" 2 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 3R_25866089_25867448 3R 25866089 25867448 CG17957 Sry-alpha TSS overlap 2.356004251 25867279 3.624399616 25866866 5.660692951 25866452 1 0 0 0 0 3 2 2 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_26589558_26590308 3R 26589558 26590308 CG1322 zfh1 1340 0.916046759 26590162 4.405379443 26589932 5.591397849 26589932 0 1 0 0 1 "Lai et al., 1991" 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 0 0 3R_26592529_26593072 3R 26592529 26593072 CG1322 zfh1 transcript overlap 2.01487779 26592636 3.538904899 26592916 6.640382318 26592916 1 0 0 0 1 "Lai et al., 1991" 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_26607274_26608079 3R 26607274 26608079 CG1322 zfh1 transcript overlap 2.392136026 26607661 4.071085495 26607661 6.946236559 26607661 1 0 0 0 1 "Lai et al., 1991" 2 2 1 0 0 0 2 2 0 0 0 0 2 0 0 0 0 0 3R_26675168_26675975 3R 26675168 26675975 CG1378 tll 2062 2.862911796 26675278 3.46685879 26675278 5.112305854 26675558 1 0 0 0 0 "Liawa and Lengyel, 1993" 1 0 0 0 0 0 0 0 0 0 0 0 2 2 1 1 1 1 3R_26681533_26682349 3R 26681533 26682349 CG1378 tll 3496 1.921360255 26681906 4.04803074 26682186 6.284348865 26682186 0 1 0 0 0 "Liawa and Lengyel, 1993" 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_27564602_27565704 3R 27564602 27565704 CG1873 Ef1alpha100E transcript overlap 1.55685441 27564992 3.676272815 27564712 5.001194743 27564712 0 1 0 0 0 2 1 1 0 0 0 3 2 1 0 0 0 1 0 0 0 0 0 3R_27817517_27817672 3R 27817517 27817672 CG31000 heph transcript overlap 1.110520723 27817589 9.066282421 27817589 11.72401434 27817589 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 4_76522_77315 4 76522 77315 CG2125 ci transcript overlap 9.421891605 77162 4.349663785 77162 5.709677419 77162 1 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 X_225782_227200 X 225782 227200 CG3796 ac TSS overlap 1.538788523 226732 4.341018252 226847 6.272401434 226847 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 X_266022_266824 X 266022 266824 CG3839 l(1)sc TSS overlap 5.081827843 266393 9.427473583 266393 15.00358423 266393 1 0 0 0 1 "Romani et al., 1987" 1 0 0 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 X_385686_386246 X 385686 386246 CG4293 CG4293 transcript overlap 1.150903294 386076 5.886647454 386076 9.310633214 386076 0 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 X_440581_441651 X 440581 441651 CG6172 vnd 6212 5.154091392 440935 10.40057637 440935 10.22341697 440935 1 0 0 1 1 "McDonald et al., 1998; Stathopoulos et al., 2002; Markstein et al., 2004" 4 2 2 1 1 1 2 1 1 1 1 1 3 2 1 1 1 1 X_442754_443577 X 442754 443577 CG6172 vnd 4286 6.407013815 443144 11.10662824 443144 14.16367981 443144 1 0 0 1 1 "McDonald et al., 1998; Stathopoulos et al., 2002; Markstein et al., 2004" 0 0 0 0 0 0 2 1 1 1 1 1 1 1 0 0 0 0 X_448941_450341 X 448941 450341 CG6172 vnd transcript overlap 24.05526036 449611 33.99807877 449611 42.15531661 449611 1 0 1 0 1 "McDonald et al., 1998; Stathopoulos et al., 2002; Markstein et al., 2004" 2 2 2 2 2 1 2 2 2 2 2 2 5 3 3 3 2 2 X_473913_474715 X 473913 474715 CG13366 CG13366 transcript overlap 2.896918172 474265 3.677233429 474265 5.002389486 474265 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 X_619974_620761 X 619974 620761 CG7434 RpL22 transcript overlap 1.912858661 620311 3.709894332 620311 5.597371565 620311 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_766510_767325 X 766510 767325 CG11663 CG11663 15207 2.205100956 766620 5.362151777 766620 5.310633214 766620 1 0 0 0 0 4 3 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 X_1167018_1167841 X 1167018 1167841 CG14622 DAAM transcript overlap 1.355119826 1167671 4.586652314 1167396 6.894193548 1167396 0 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_1333127_1333994 X 1333127 1333994 CG14791 CG14781 Rab27 CG14781 TSS overlap 2.54248366 1333758 8.101184069 1333478 10.71096774 1333618 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_1679850_1680621 X 1679850 1680621 CG14799 CG14799 1195 2.389978214 1680451 3.64262648 1680212 5.007741935 1680212 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_1755368_1756347 X 1755368 1756347 CG11579 arm transcript overlap 2.368191721 1755754 3.973089343 1755754 5.2 1755754 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_1865633_1866441 X 1865633 1866441 CG4406 CG4406 134 1.766884532 1865992 3.512378902 1866272 6.816774194 1865992 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 X_1979539_1980618 X 1979539 1980618 CG3895 ph-d 1659 3.4291939 1979649 7.495156082 1979649 2.876129032 1979649 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_1992400_1993772 X 1992400 1993772 CG18412 ph-p TSS overlap 3.38453159 1993125 5.658772874 1993411 3.738064516 1992577 1 0 0 0 0 3 0 0 0 0 0 5 0 0 0 0 0 1 0 0 0 0 0 X_1994632_1995137 X 1994632 1995137 CG18412 ph-p 1931 1.399782135 1994967 4.147470398 1994737 5.458064516 1994737 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_2125662_2126448 X 2125662 2126448 CG2924 CG2924 transcript overlap 1.303921569 2125765 3.858988159 2126043 5.243870968 2126043 0 1 0 0 0 0 0 0 0 0 0 2 1 1 1 1 1 1 0 0 0 0 0 X_2196112_2196656 X 2196112 2196656 CG2845 phl TSS overlap 2.354030501 2196348 3.889128095 2196348 5.561290323 2196348 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_2244314_2244871 X 2244314 2244871 CG14045 CG14045 494 1.708061002 2244422 3.691065662 2244701 5.11483871 2244701 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_2264124_2265274 X 2264124 2265274 CG12496 CG12496 1781 6.942265795 2264344 7.433799785 2265104 10.58709677 2265104 1 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 X_2540540_2541083 X 2540540 2541083 CG2647 per 653 2.64379085 2540923 3.658772874 2540923 5.48 2540650 1 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 X_2585216_2586509 X 2585216 2586509 CG2711 dwg 1360 1.611111111 2585842 3.003229279 2585842 7.397419355 2585842 0 1 0 0 0 5 4 1 0 0 0 5 1 1 1 0 0 0 0 0 0 0 0 X_2589522_2590356 X 2589522 2590356 CG2712 CG2712 transcript overlap 1.612200436 2589910 3.460710441 2589910 5.603870968 2589910 0 1 0 0 0 2 2 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_2992423_2992958 X 2992423 2992958 CG3936 N transcript overlap 2.108932462 2992508 4.083961249 2992508 5.864516129 2992508 1 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 X_2995280_2996295 X 2995280 2996295 CG3936 N transcript overlap 2.005446623 2996115 3.631862217 2996115 5.166451613 2996115 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_3008126_3009129 X 3008126 3009129 CG3936 N transcript overlap 1.635076253 3008737 5.696447793 3008479 6.539354839 3008479 0 1 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 X_3012003_3012747 X 3012003 3012747 CG3936 N transcript overlap 2.311546841 3012393 8.172228202 3012393 10.90580645 3012393 1 0 0 0 0 10 8 6 6 4 3 7 7 6 3 1 0 0 0 0 0 0 0 X_3159777_3160027 X 3159777 3160027 CG32498 dnc transcript overlap 1.776688453 3159858 4.996770721 3159858 6.607741935 3159858 0 1 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_3204519_3205563 X 3204519 3205563 CG10798 dm 23776 4.452069717 3205150 6.179763186 3205150 7.369032258 3205150 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 X_3414651_3414999 X 3414651 3414999 CG32792 CG32792 9560 1.751633987 3414842 3.810548977 3414842 6.823225806 3414842 0 1 0 0 0 3 2 1 1 1 0 3 2 2 2 2 0 0 0 0 0 0 0 X_3682980_3683529 X 3682980 3683529 CG2904 ec transcript overlap 2.84204793 3683359 14.7050592 3683359 18.83870968 3683359 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_3686848_3687966 X 3686848 3687966 CG2904 ec transcript overlap 6.223311547 3686958 15.76533907 3686958 18.29677419 3686958 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 4 2 2 0 0 0 X_3690307_3693013 X 3690307 3693013 CG2904 ec transcript overlap 3.030501089 3690954 12.03552207 3690954 12.03354839 3690954 1 0 0 0 0 2 2 1 0 0 0 5 2 0 0 0 0 3 2 0 0 0 0 X_3764183_3764463 X 3764183 3764463 CG15240 CG15240 7171 2.87254902 3764293 4.467168999 3764293 6.815483871 3764293 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_4056093_4056899 X 4056093 4056899 CG3665 Fas2 4766 2.654684096 4056449 7.613562971 4056449 10.07483871 4056449 1 0 0 0 0 1 1 1 1 0 0 2 0 0 0 0 0 5 1 0 0 0 0 X_4784787_4786285 X 4784787 4786285 CG6899 Ptp4E transcript overlap 1.761437908 4785139 4.01722282 4785416 5.07483871 4785691 0 1 0 0 0 5 2 0 0 0 0 7 5 0 0 0 0 3 0 0 0 0 0 X_4878200_4878725 X 4878200 4878725 CG6824 ovo 14809 2.159041394 4878590 36.58449946 4878590 41.16258065 4878590 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_4891672_4893745 X 4891672 4893745 CG6824 ovo TSS overlap 2.88671024 4892315 16.23573735 4892315 18.19225806 4892315 1 0 0 0 0 8 8 5 0 0 0 6 4 4 1 0 0 2 0 0 0 0 0 X_4894342_4894910 X 4894342 4894910 CG6824 ovo transcript overlap 0.887799564 4894451 4.688912809 4894731 5.574193548 4894731 0 1 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_5725256_5726009 X 5725256 5726009 CG16721 CG16721 transcript overlap 1.076252723 5725576 3.809472551 5725855 5.651612903 5725855 0 1 0 0 0 2 1 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 X_6386417_6386697 X 6386417 6386697 CG3950 CG3950 transcript overlap 1.394335512 6386527 6.79547901 6386527 6.513548387 6386527 0 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_6649406_6649980 X 6649406 6649980 CG4532 pod1 transcript overlap 1.183006536 6649511 5.457481163 6649790 6.958709677 6649790 0 1 0 0 0 1 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 X_6667484_6668837 X 6667484 6668837 CG4547 CG4547 TSS overlap 2.417211329 6668154 7.033369214 6668154 10.02709677 6668154 1 0 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_6722976_6723765 X 6722976 6723765 CG33692 CG33691 CG33692 CG33691 transcript overlap 3.296296296 6723596 3.65123789 6723596 5.602580645 6723596 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_6833639_6834398 X 6833639 6834398 CG14430 CG14430 1913 3.371459695 6833990 5.069967707 6833990 2.580645161 6833990 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_6842383_6843419 X 6842383 6843419 CG2977 inx7 transcript overlap 2.479302832 6843280 7.664155005 6842755 9.503225806 6842755 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_6881874_6882971 X 6881874 6882971 CG14427 CG14427 2873 8.139433551 6882263 9.864370291 6882263 14.40129032 6882263 1 0 0 0 0 6 5 2 1 0 0 4 4 3 2 0 0 0 0 0 0 0 0 X_6884332_6887229 X 6884332 6887229 CG14427 CG14427 TSS overlap 2.928104575 6886109 4.777179763 6885659 5.482580645 6885821 1 0 0 0 0 4 2 2 2 1 0 3 1 0 0 0 0 2 1 1 1 0 0 X_6941115_6941878 X 6941115 6941878 CG18350 CG14425 Sxl CG14425 transcript overlap 2.674291939 6941493 4.434876211 6941493 5.356129032 6941493 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 X_7014211_7015554 X 7014211 7015554 CR32730 CR32730 19125 2.367102397 7014600 12.29817008 7014600 12.55612903 7014600 1 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 X_7141851_7142904 X 7141851 7142904 CG9653 brk 5311 8.096949891 7142559 17.15931109 7142559 22.45677419 7142559 1 0 1 0 1 "Jazwinska et al., 1999; Markstein et al., 2004" 2 2 2 1 0 0 3 3 2 2 0 0 4 3 3 3 0 0 X_7165446_7167592 X 7165446 7167592 CG1643 Atg5 transcript overlap 17.59912854 7165832 45.19375673 7166112 55.50064516 7166112 1 0 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 6 3 2 0 0 0 X_7736394_7738064 X 7736394 7738064 CG17256 Nek2 TSS overlap 9.555555556 7737113 4.721205597 7737113 5.952258065 7737391 1 0 0 0 0 3 2 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 X_7782758_7783591 X 7782758 7783591 CG1530 CG1530 transcript overlap 1.401960784 7782868 4.375672766 7783148 6.223225806 7783148 0 1 0 0 0 0 0 0 0 0 0 3 3 1 1 1 0 1 0 0 0 0 0 X_8056279_8056561 X 8056279 8056561 CG32717 sdt transcript overlap 2.910675381 8056391 5.864370291 8056391 5.28516129 8056391 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 1 0 X_8059091_8062037 X 8059091 8062037 CG32717 sdt transcript overlap 2.122004357 8061368 7.165769645 8059506 10.53290323 8059506 1 0 0 0 0 2 0 0 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 X_8065013_8066065 X 8065013 8066065 CG32717 sdt transcript overlap 1.868191721 8065671 5.381054898 8065671 6.358709677 8065671 0 1 0 0 0 4 3 1 0 0 0 4 4 3 2 0 0 1 0 0 0 0 0 X_8378680_8379400 X 8378680 8379400 CG1634 Nrg transcript overlap 2.10130719 8379237 3.940796555 8379237 5.521290323 8379237 1 0 0 0 0 2 1 0 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 X_8406705_8407526 X 8406705 8407526 CG11265 CG11265 transcript overlap 2.15577342 8407094 5.6598493 8407094 6.089032258 8407094 1 0 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 X_8498803_8500756 X 8498803 8500756 CG12154 oc 2917 1.956427015 8499791 5.803013994 8500045 7.172903226 8500045 0 1 0 0 0 "Gao and Finkelstein, 1998" 0 0 0 0 0 0 2 1 0 0 0 0 4 2 0 0 0 0 X_8559488_8560188 X 8559488 8560188 CG2004 CG1785 CG2004 CG1785 TSS overlap 5.630718954 8559869 3.827771798 8559869 5.232258065 8559731 1 0 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 X_8675990_8677030 X 8675990 8677030 CG32710 CG32710 11532 2.190631808 8676366 4.128094726 8676366 5.065806452 8676366 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_8770080_8770616 X 8770080 8770616 CG10966 rdgA TSS overlap 1.82788671 8770240 2.938643703 8770240 5.618064516 8770240 0 1 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 X_8886781_8888133 X 8886781 8888133 CG10962 CG10962 transcript overlap 2.60130719 8887712 23.73519914 8887712 34.33806452 8887712 1 0 0 0 0 4 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_8972551_8973390 X 8972551 8973390 CG12664 ld14 transcript overlap 1.749455338 8972940 5.010764263 8972940 6.732903226 8972940 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_8974223_8975336 X 8974223 8975336 CG12664 ld14 transcript overlap 4.969498911 8974868 10.8729817 8974868 10.71096774 8974868 1 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 X_9037656_9038765 X 9037656 9038765 CG12056 CG12056 TSS overlap 1.45751634 9037921 3.37459634 9037921 5.892903226 9038060 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_9340779_9342864 X 9340779 9342864 CG15316 CG15316 transcript overlap 1.617647059 9342734 7.696447793 9342468 8.731612903 9342468 0 1 0 0 0 3 2 1 0 0 0 3 1 0 0 0 0 3 0 0 0 0 0 X_9519705_9520817 X 9519705 9520817 CG15319 nej transcript overlap 1.786492375 9520095 8.520990312 9520309 9.547096774 9520309 0 1 0 0 0 3 3 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_9933054_9933768 X 9933054 9933768 CG12094 CG12094 transcript overlap 2.053376906 9933629 4.839612487 9933429 6.260645161 9933429 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_10338981_10339618 X 10338981 10339618 CG33175 spri transcript overlap 3.011982571 10339161 4.411194833 10339021 5.830967742 10339021 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 X_10647062_10647595 X 10647062 10647595 CG1691 Imp transcript overlap 2.117647059 10647156 7.96555436 10647435 10.3883871 10647435 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_11167469_11168367 X 11167469 11168367 CG1641 sisA TSS overlap 2.934640523 11168208 6.613562971 11168208 7.421935484 11167928 1 0 0 0 0 2 1 1 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 X_11184289_11185299 X 11184289 11185299 CG11759 Kap3 TSS overlap 12.06971678 11184909 6.275565124 11184909 9.494193548 11184909 1 0 0 0 0 3 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_11532767_11533729 X 11532767 11533729 CG1830 PhKgamma TSS overlap 2.58360302 11532807 5.479690522 11533233 8.684137931 11533233 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_11677785_11679988 X 11677785 11679988 CG15740 CG15740 transcript overlap 1.870550162 11678420 78.2205029 11678420 75.55034483 11678420 0 1 0 0 0 17 11 4 1 0 0 9 7 2 0 0 0 0 0 0 0 0 0 X_11686248_11686556 X 11686248 11686556 CG1967 CG1967 TSS overlap 3.228694714 11686358 2.777562863 11686358 5.231724138 11686358 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_12040181_12041502 X 12040181 12041502 CG12720 CG12720 10473 2.243797195 12040254 4.926499033 12040534 6.449655172 12041337 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 2 0 0 0 0 0 X_12488043_12488909 X 12488043 12488909 CG2028 CkIalpha transcript overlap 1.989212513 12488146 5.456479691 12488447 8.783448276 12488447 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 X_12497277_12498687 X 12497277 12498687 CG4070 Tis11 transcript overlap 8.323624595 12498239 4.13926499 12498239 5.148965517 12498239 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_12500143_12500661 X 12500143 12500661 CG4070 Tis11 transcript overlap 2.45631068 12500278 5.424564797 12500278 3.242758621 12500278 1 0 0 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 X_12501444_12501691 X 12501444 12501691 CG4070 Tis11 transcript overlap 2.247033441 12501542 3.66827853 12501542 6.700689655 12501542 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12568992_12570297 X 12568992 12570297 CG4013 Smr transcript overlap 2.126213592 12569363 5.800773694 12569851 8.52137931 12569851 1 0 0 0 0 5 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 X_12759829_12760450 X 12759829 12760450 CR32646 CR32646 12022 1.696871629 12760143 3.684719536 12760143 6.154482759 12760143 0 1 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13061251_13062333 X 13061251 13062333 CG1771 mew transcript overlap 1.915857605 13061681 5.344294004 13061681 8.910344828 13061681 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_13063707_13064520 X 13063707 13064520 CG1771 mew transcript overlap 1.694714132 13064072 8.138297872 13064072 14.60551724 13064072 0 1 0 0 0 2 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_13067818_13068566 X 13067818 13068566 CG1771 mew transcript overlap 2.199568501 13068123 5.656673114 13068123 8.608275862 13068123 1 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 X_13264342_13264732 X 13264342 13264732 CG32635 CG32635 15111 2.489751888 13264562 6.525145068 13264562 9.849655172 13264562 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13272418_13273226 X 13272418 13273226 CG32635 CG32635 6617 2.364617044 13272776 5.791102515 13272776 8.402758621 13272776 1 0 0 0 0 4 0 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 X_13382427_13382692 X 13382427 13382692 CG15757 CG15757 4847 2.059331176 13382522 4.664410058 13382522 6.913103448 13382522 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13513751_13514689 X 13513751 13514689 CG12177 CG12177 TSS overlap 4.11218986 13514251 10.2040619 13514251 11.00827586 13514251 1 0 1 0 1 "Levine lab, unpublished" 0 0 0 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 X_13828478_13829840 X 13828478 13829840 CG18319 ben 451 1.637540453 13829074 5.254352031 13828752 10.82758621 13828752 0 1 0 0 0 1 0 0 0 0 0 7 4 1 0 0 0 1 0 0 0 0 0 X_14508419_14508699 X 14508419 14508699 CG5321 CG5321 4842 1.820927724 14508529 3.164410058 14508529 5.111724138 14508529 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_15428017_15428519 X 15428017 15428519 CG9220 CG9220 3152 3.415318231 15428127 4.115087041 15428349 6.223448276 15428127 1 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_15458274_15459269 X 15458274 15459269 CG9224 sog transcript overlap 4.885652643 15458875 9.323984526 15458875 14.02896552 15458875 1 0 1 0 1 "Francois et al., 1994; Markstein et al., 2004" 0 0 0 0 0 0 0 0 0 0 0 0 4 3 2 1 1 1 X_15480295_15481751 X 15480295 15481751 CG8117 CG8117 2067 8.235167206 15480699 16.40618956 15480699 18.33931034 15480699 1 0 0 0 0 1 0 0 0 0 0 2 2 1 1 0 0 5 4 3 1 1 0 X_15494396_15494956 X 15494396 15494956 CG8119 CG8119 1566 1.828478964 15494506 2.575435203 15494506 5.87862069 15494506 0 1 0 0 0 3 2 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 X_15513720_15514792 X 15513720 15514792 CG12708 CG12708 4282 2.464940669 15514101 4.112185687 15514101 5.911724138 15514101 1 0 0 0 0 3 2 0 0 0 0 4 2 0 0 0 0 4 0 0 0 0 0 X_16037296_16038090 X 16037296 16038090 CG9908 disco 12581 1.948220065 16037645 3.877176015 16037406 5.408275862 16037406 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_16070229_16070527 X 16070229 16070527 CR32914 snRNA:U5:14B 17527 1.201725998 16070357 2.366537718 16070357 5.776551724 16070357 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_16075614_16076434 X 16075614 16076434 CR32914 snRNA:U5:14B 11620 2.269687163 16076001 3.534816248 16076001 6.933793103 16076001 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_16097611_16098169 X 16097611 16098169 CG12507 CG12507 2232 1.343042071 16097999 3.098646035 16097719 5.126896552 16097719 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_16255401_16256479 X 16255401 16256479 CG9968 Anxb11 TSS overlap 1.747572816 16256304 3.332688588 16256175 5.548965517 16256047 0 1 0 0 0 2 0 0 0 0 0 3 2 2 2 0 0 0 0 0 0 0 0 X_16608363_16609400 X 16608363 16609400 CG9623 if transcript overlap 4.705501618 16609230 6.977756286 16609230 6.804137931 16609230 1 0 0 0 0 1 1 1 1 0 0 3 2 2 1 0 0 2 0 0 0 0 0 X_16627393_16627867 X 16627393 16627867 CG4768 CG4768 transcript overlap 2.955771305 16627499 6.584139265 16627499 12.91448276 16627499 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_16777998_16778694 X 16777998 16778694 CG13001 CG13001 1199 0.933117584 16778248 3.749516441 16778248 5.692413793 16778248 0 1 0 0 0 2 2 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 X_16925096_16925564 X 16925096 16925564 CG16700 CG16700 227 1.434735707 16925206 3.462282398 16925206 5.136551724 16925206 0 1 0 0 0 1 1 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 X_16958278_16959385 X 16958278 16959385 CG5004 CG5004 transcript overlap 3.207119741 16958668 6.348162476 16958668 6.48 16958668 1 0 0 0 0 3 0 0 0 0 0 7 1 1 0 0 0 1 0 0 0 0 0 X_17011899_17013045 X 17011899 17013045 CG5055 baz transcript overlap 1.659115426 17012268 6.647969052 17012658 11.72965517 17012658 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_17148283_17148663 X 17148283 17148663 CG5488 B-H2 TSS overlap 1.101402373 17148333 2.486460348 17148333 5.689655172 17148333 0 1 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_17342180_17343470 X 17342180 17343470 CG8557 CG8557 18928 2.486515642 17342284 3.205029014 17342788 5.324137931 17342788 1 0 0 0 0 4 2 0 0 0 0 7 2 1 1 1 1 0 0 0 0 0 0 X_17485409_17486408 X 17485409 17486408 CG32555 RhoGAPp190 transcript overlap 2.376483279 17486030 4.915860735 17485751 7.995862069 17485751 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 X_17545811_17546900 X 17545811 17546900 CG32560 CG32560 transcript overlap 2.337648328 17546169 5.226305609 17546169 8.194482759 17546169 1 0 0 0 0 2 1 1 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 X_17623669_17624448 X 17623669 17624448 CG6352 OdsH 539 1.716289105 17624278 2.843326886 17624018 5.315862069 17624278 0 1 0 0 0 1 1 1 1 1 0 3 1 1 1 0 0 2 0 0 0 0 0 X_17662660_17664954 X 17662660 17664954 CG6398 CG6398 TSS overlap 2.885652643 17663543 3.917794971 17663543 6.943448276 17663543 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 4 1 1 0 0 0 X_17926550_17927111 X 17926550 17927111 CG7122 RhoGAP16F TSS overlap 1.134843581 17927011 3.426499033 17926871 5.420689655 17926871 0 1 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18144518_18145653 X 18144518 18145653 CG5993 os 2756 1.40021575 18145524 3.98549323 18145424 5.368275862 18145524 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18146422_18147233 X 18146422 18147233 CG5993 os 4660 1.950377562 18146794 4.196324952 18146794 6.72137931 18146794 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18518319_18520273 X 18518319 18520273 CG6578 phm TSS overlap 4.774541532 18518976 12.33558994 18518696 22.24 18518696 1 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3 2 1 0 0 0 X_18600034_18600587 X 18600034 18600587 CG32540 CCKLR-17D3 transcript overlap 1.306364617 18600144 3.617988395 18600144 5.044137931 18600144 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_18633112_18633890 X 18633112 18633890 CG7001 Pk17E transcript overlap 1.340884574 18633502 3.978723404 18633502 5.257931034 18633502 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_18701959_18702490 X 18701959 18702490 CG17757 CG17757 2582 2.738942826 18702345 5.576402321 18702345 9.008275862 18702345 1 0 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_18987399_18987937 X 18987399 18987937 CG7481 CG7502 RhoGAP18B CG7502 transcript overlap 1.009708738 18987487 3.082205029 18987767 6.095172414 18987767 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_19013644_19014369 X 19013644 19014369 CG7556 CG7453 CG7556 CG7453 TSS overlap 4.673139159 19014081 3.675048356 19013964 5.303448276 19014081 1 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_19054341_19055916 X 19054341 19055916 CG7884 CG7884 TSS overlap 1.837108954 19054620 6.599613153 19055016 8.211034483 19055016 0 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_19587885_19588560 X 19587885 19588560 CG12703 CG12703 transcript overlap 1.30420712 19587989 3.580270793 19588269 7.228965517 19588269 0 1 0 0 0 2 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_19598863_19600465 X 19598863 19600465 CG12702 CG12702 2603 1.553398058 19599720 4.389748549 19599720 5.755862069 19599720 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 X_20041535_20042237 X 20041535 20042237 CG18000 sw transcript overlap 1.154261057 20041648 2.387814313 20041787 5.64137931 20041787 0 1 0 0 0 4 3 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 X_20502036_20503071 X 20502036 20503071 CG1849 run 2046 1.415318231 20502146 2.82688588 20502626 6.353103448 20502626 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 X_20504075_20505996 X 20504075 20505996 CG1849 run TSS overlap 2.67206041 20504619 4.090909091 20504619 6.100689655 20504619 1 0 0 0 0 2 2 2 2 2 0 0 0 0 0 0 0 2 1 1 1 1 1 X_20527810_20528896 X 20527810 20528896 CG1324 CG1324 17740 1.474649407 20528200 4.621856867 20528450 6.551724138 20528450 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 X_20555158_20555427 X 20555158 20555427 CG15452 CG15452 1198 1.513484358 20555261 3.284332689 20555261 5.572413793 20555261 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_20842156_20842996 X 20842156 20842996 CG1529 CG1529 TSS overlap 1.524271845 20842546 3.549323017 20842546 7.252413793 20842546 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 X_21154223_21154487 X 21154223 21154487 CG1484 fliI transcript overlap 0.992448759 21154324 3.498065764 21154324 5.124137931 21154324 0 1 0 0 0 1 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_21180303_21180863 X 21180303 21180863 CG1414 CG1410 bbx waw transcript overlap 0.921251348 21180693 3.012572534 21180413 5.664827586 21180413 0 1 0 0 0 3 3 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_21194071_21194644 X 21194071 21194644 CG1417 slgA transcript overlap 1.331175836 21194461 3.616054159 21194461 6.24137931 21194181 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_21659635_21660165 X 21659635 21660165 CG14619 CG14619 transcript overlap 1.617044229 21659745 3.470019342 21660025 5.336551724 21660025 0 1 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_22039681_22040474 X 22039681 22040474 CG9559 fog transcript overlap 1.46386192 22040307 3.863636364 22040069 6.246896552 22040069 0 1 0 0 1 "Costa et al., 1994" 2 1 1 1 1 0 2 1 1 1 1 0 0 0 0 0 0 0